AMCG00019963


Basic Information

Item Value
gene id AMCG00019963
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4658354 ~ 4677885 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019963
ATGGGTGAAGATCCAGACGTGATCCCCGAGCGGGAAATGAAGGACTTCCAGTTCAGGCAGATGAAGAAGATCCGCGTCTTCGCCGCCCCGGAGCTCATGCCGCGGGAGAGGTCCAGCCTGCTCGCCGTGTCCAACAAGTACGGGCTGACCTGCGCGGGCAGCGGGGCGCTCCTCAAGCTGTTCCTCACCCGGGACATCATCGCGGCCAACCGGGTCGAGGGAAATCCCAACGAGATAGTGGAGACTGTGAAAGGGCTGTGCGTTCCCGTGACATTCCCCATGCACCATTTGGCGCTGAGCTGCGACGAGCTCACGCTGTCGGTGTGCACCGTGTCCAGTGAGAGCGGCCTGAAGATCTCCTTCTACGATGTCCGCTCTCTCCTCAATAAGGCCCGGAAGGAGAAACTGCCGTTTGCCGATTACAGGCCCCCGACTGGGGAAGGCACCGCCGTGCAAGACTTGAAGTGGAACCCGGCCGTGCCCTCGCTGCTGGCGGTCTGCCTGTCCGATGGCAGTATGTGCTCCCTGGAGGTCACGGATGGTGTGAAGCTGCTGGCCCAGCTGCCCCCCTCCACAGGCGTTACATGCGTTTGCTGGAGTCCAAAAGGAAAGCAGGTGGCTGCGGGGAAACAGAACGCCACTGTTATCCAGTATTCACACACCCTGCAGGAGAAAAAAGTGATCCCCTGTCCTAATTTCTACAGCTCTGACAACCCGGTTAAAGTGTTGGACATCCTGTGGCTAAGTACATATGTCTTTGCTGTGACGTATGCTGCAGCTGATGGTGCTTTGGAGACCCCGCCTGACCTGGTGGTGGTCTCCCTTCCTGTAACTTCCATTGAAGTCAGCATCATCGCCAAGCAGGAAGACAAGACCAACTGGGAGCTGTGGCTCTTGGAGGATGCCAGTAGGGCAGAGCTGCCTGTGACCCTAAACAACGATGACACGCTTCCTGTGGGGGTCGCCATTGACTACACCAGCCAGGAGCAGATCCCGATTGGCGATGAGAAGACCCTGCCTCCAGCCCCCGTGCTCATGCTGCTCTCCACTGATGGCGTTCTGTGTCCTTTCTACCTCATCAACCAAAACCCTGGTGCGAAGCAGCTCTCCACCCTGCCGGTCAGCCTGTCCCTTGACGGGGAAAGGCAGCCTAAGGCGGTCGTCCCTGCAGGGCCCCCTGGTCTCCGCCCTCCAGCGTCGGCCCCTGTACCTCCCATCCCTCCGGGGTCCTCTGCTCCCGCCCCCAGCACTGGCCTCAGCACGGGCTTTTCTTTCGCCCCCTCCGTGCAAAACTCTGCGGCCCCTTCCGCCTTCTCTCTGAGCTCCACAATGTCCAAGGCCTCGCCAGCCACCCCTTCCCTGGGAGCTGCCGCCTTCTCCTTTGCATCTCCCACCTCCAAGCCCCTGCCagccgccccctccccctccgccTCGGCCTTCTCTTTCAGCGCCCCCCCAGCGAAGCCCCCGGGGGAGGGCGTTTCGGCCCCCTCTGTGCCTGCTACTCCAGCAAGCAGCTTCAAGAGCAGCACAGAGATCGCAACCCCTGCTGTGAAAGTCAACCTCAACGACAGGTTTTCAGCTGTGGAGACCCCAGCACCTCCAATCGCTGGTCCTCCGCAGTTCTCCTTTGCCTCCTTGCCCAAGGCGGCCTTCCCCAGCCCGGTCAACCAGTCCACCCCACTGCCCAGCGCCAAGACGGCCCTCGCCTCTGGTGCGCCTGCTGCTGCACGGCCAGTTCAGACTGTCACCACAACTGCAATGGCCCCGAAGCCTGGCCCGGCCCCTCAGGCACCGGGAAGAACCGCCACTCCACAGccccctctctctgtcaaaGCCCTGGAGAAACAGCTGCAGCACAGGAAAGAGACAGACCCAGTCATGGCAGGAATACTGGAGGAGATCGCTCACTTCCAGAAGGAGCTGGATGACCTGAAGTCGCGCACGGAGAAGGCCGATTTCAAAGTGGGCAGCACGCAGCAGATGAAAGAATTGAGGAAGGAATCGGAGGATCTTCACACCTTCATACTGGAGATCAAAGAGACGACGGAGTCTCTGCATGGCGATATTAGCACTCTGAAGACCACCATGCTGGAGGGCTTTGCGGGGGCTGAGGAAGCCAAAAGTCAGAACGAGCTCAACAAGGACCGCGGATACCTCCAGCTGCTGTACAAGAAGCCTCTGGACCCCAGGAGCGAAGACCAGCTCAAGGAAATCCGTAGGTTGTACCAGTACATCAAGTTTGCAGTGGAAGATGTAAATGATGTGCTTGATCTGGAGTGGGAGAAACAtctggagaagaagaagaaaaagaaGCACCTGATCGTCCCGGAGAGGGAAGCGCTGTTCAGTGCTCTGGCCAATCACCTTGACATCATCAATCAGCAGAAGCAGAAGCTGGCCGTGCTTGTGACCAGCCTGCAGGACCTCCGCCTGTACAACAAAACGTCCCAGTGGAGCGTCCCCAGCCAGCCCTCCACTCATGCCACAGAACAAGGTTTGGATATTGAGCTGGAGAGTCTCCGAAACGCGCTAGTGAAAGCCAGTCTGGAGACAACCTCCAAGACGTCCTCCAAATCCCCAGCCAAGATGTCCCCAGTGAAACAAAGCCAGCTGAGGAATTTCCTCTCCAAGAGACAGACGCCTCCTGTTCGGTCAACAGCTCCAGCCAATCTGTCCAGATCGGCGTTCCTCTCCCCAAAGTTCTACGAGGACCTGGATGACGTGAGCTCCACCTCGTCTGTATCCCAGGCCCTGGACCTCGAGGACCCCCAGGCCGGGGAGTTGGAGGAAGCCCCCATTCCGGTGCCACGTCACCCCACCGTGGTCCGCACTCCCTCCATCCAGCCGGGCTACAGTCCGCAGTCGACCCCCTTCAGCAAGATCCACGCCGGCCTGAGCTCGGTCATCAGCCCAGTACCAACGAATAAAATCAGTGCCGGGGGTGCGGACAGCACAGCCTTTGTCACGAAGACGGTGAAGCACGGGGCCCCGCCCAGCGAGAGGAGCCTGCCAGTCACTCTGCCCGCCCAGCAGGCAGCCGCGGCCGCCGCCATGCGCAGACAGATGGCCAATCAGAAACCAGTGTTGAACACCTCCCTCACGGAATCAACGTTGAAGAACGTGCCTCAGGTGGTGAACGTCCAGGAGCTGAAAGACAAGGGTCCTGCGCTGCCCGTATCTACGGTTCTCAGGTGA

Function

GO: NA

KEGG:

id description
K14317 NUP214, CAN; nuclear pore complex protein Nup214

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019963 True 3198 mRNA 0.60 23 4658354 4677885

Neighbor

gene id symbol gene type direction distance location
AMCG00019957 aif1l coding upstream 7788 4631041 ~ 4650566 (+)
AMCG00019958 NA coding upstream 36821 4603295 ~ 4621533 (+)
AMCG00019961 NA coding upstream 70413 4559306 ~ 4587941 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 102449 4524356 ~ 4555905 (+)
AMCG00019951 NA coding upstream 586307 4056495 ~ 4072047 (+)
AMCG00019962 NA coding downstream 90230 4768115 ~ 4768663 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 117548 4795433 ~ 4795807 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 183210 4861095 ~ 4887003 (+)
AMCG00019969 NA coding downstream 211893 4889778 ~ 4896490 (+)
AMCG00019973 NA coding downstream 311655 4989540 ~ 4992117 (+)
G59857 LOC100136012 non-coding upstream 618434 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 706944 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 811924 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 929657 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 934908 3722891 ~ 3723446 (+)
G59936 NA non-coding downstream 29679 4707564 ~ 4734675 (+)
G59955 NA non-coding downstream 72580 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 80400 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 118689 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 314753 4992638 ~ 5028847 (+)
AMCG00019934 NA other upstream 1406947 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1688759 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3549358 1074816 ~ 1108996 (+)
G59305 NA other upstream 4212824 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 145928 4823813 ~ 4856929 (+)
G60137 NA other downstream 677887 5355772 ~ 5361863 (+)
G60132 NA other downstream 680579 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1429109 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1504814 6182699 ~ 6187889 (+)

Expression


Co-expression Network