AMCG00019965 (LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726)


Basic Information

Item Value
gene id AMCG00019965
gene name LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4795433 ~ 4795807 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019965
ATGACGGTGGCTGGCATCCAGAAGCTGGTCAAGCGCAAAGGCCCCTGGGAGATGAGCCCCAGTTTCCTGGACTATGTGGCCATGGACGTGTACTCCTTCCCGGCCGCCCACGCCAGCCGCGCTGCCATGGTGGCCAAGTTCCTGCTGAACCACCTGGTGCTGGCCGTGCCCCTGCGCATCCTGCTGGTCCTCTGGGCCTTCCTGGTGGGCGTCTCGCGGATCATGCTGGGCCGACACCACCTGACCGACGTGGCCTGCGGCTTTGCCCTGGGCTTCCTGCACTACAACCTGGTGGAGATGGTGTGGCTGTCCTCCAACACCTGCCAGACTCTCATCTCCATCTCCACCTTCAGCTGGAGCCCCTTTTTTAAATGA

Function

NR:

description
PREDICTED: inactive phospholipid phosphatase 7-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K17981 MTFP1, MTP18; mitochondrial fission process protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019965 True 375 mRNA 0.63 1 4795433 4795807

Neighbor

gene id symbol gene type direction distance location
AMCG00019962 NA coding upstream 26770 4768115 ~ 4768663 (+)
AMCG00019963 NA coding upstream 117548 4658354 ~ 4677885 (+)
AMCG00019957 aif1l coding upstream 144867 4631041 ~ 4650566 (+)
AMCG00019958 NA coding upstream 173900 4603295 ~ 4621533 (+)
AMCG00019961 NA coding upstream 207492 4559306 ~ 4587941 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 65288 4861095 ~ 4887003 (+)
AMCG00019969 NA coding downstream 93971 4889778 ~ 4896490 (+)
AMCG00019973 NA coding downstream 193733 4989540 ~ 4992117 (+)
AMCG00019978 slc25a25,LOC106570619 coding downstream 295627 5091434 ~ 5103902 (+)
AMCG00019981 NA coding downstream 309582 5105389 ~ 5115802 (+)
G59956 NA non-coding upstream 36786 4758285 ~ 4758647 (+)
G59955 NA non-coding upstream 42537 4750465 ~ 4752896 (+)
G59936 NA non-coding upstream 60758 4707564 ~ 4734675 (+)
G59857 LOC100136012 non-coding upstream 755513 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 844023 3951130 ~ 3951410 (+)
G59959 NA non-coding downstream 767 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 196831 4992638 ~ 5028847 (+)
G60072 NA non-coding downstream 378629 5174436 ~ 5175779 (+)
G60201 NA non-coding downstream 900820 5696627 ~ 5696853 (+)
G60202 NA non-coding downstream 904694 5700501 ~ 5700840 (+)
AMCG00019934 NA other upstream 1544026 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1825838 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3686437 1074816 ~ 1108996 (+)
G59305 NA other upstream 4349903 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 28006 4823813 ~ 4856929 (+)
G60137 NA other downstream 559965 5355772 ~ 5361863 (+)
G60132 NA other downstream 562657 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1311187 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1386892 6182699 ~ 6187889 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030598 plpp7a coding NC_007116.7 CM002889.2 64368770 ~ 64378781 (+)