AMCG00019966 (uck1,LOC102793675)


Basic Information

Item Value
gene id AMCG00019966
gene name uck1,LOC102793675
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4861095 ~ 4887003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019966
CGCCATGGTTACGCTCTGCGCTCGACCCCGCGCCCTGCAGACGCAGCGAGTCGATCTCAGAGCAGCAGCCGAGCCTCTGCACCGCCCTGAGCGGGGAGATGTGACTTCGTCTGCAGAGATACGTGCACTAACAGTCAATCATGGTGGGCTTCATCAAACTGCCCATAACCCTTAAAGCGGAGATCAACCTGGTTTTAGTGGCGGTGACTGGGCTGGGACTGGTGACCAGGTTGTGGGGAATACATTTCCCCAAAGCGGTGGTGTTTGATGAGGTGTATTATGGGCAGTTTGTGTCTCTGTACATGAAGCAGGTGTTCTTCATTGATGACAGCGGCCCCCCGCTCGGGCACATGATTCTGGCTttaggagCCTACCTCGGAGGATTTGATGGAAACTTTCAGTGGAACCGGATAGGAGCAGAGTACTCCAGCAATGTGCCTGTGTGGAGTCTGCGGGTGATGCCAGCCCTGATGGGGGCGCTGTCGGTGCCCCTGGGGTACCAGCTGGTTGTAGAACTGGGCTACTCTCATCTCACAGCGTTGGTAGCATCTCTCCTGCTTCTGATGGagaACTCCCTGATCGTCCAGGCTCGCTTCATGCTGCTGGAGTCGGTGCTGGTTTTCTTCCTCCTGCTGGCCGTTTTCTCCTACCTGAAATTTCACAATGCCAGCAGCTCCAGCACGCCCGGGCCCAGCAGTGCGTGGGCTTGGTTAATCCTGTGTGGGGTGGCCTGTGCTGGGGCTGTAGGTGTAAAGTATACCGGTCTATTCACATAcctgctgctgctcagtatCGCTGGCGTCCACACATGGCAAATCATCGGGGACCGGAGACTGCCCAGTGTGGGGGTGCTAGGCCAGGTGACGGGCCGGGCCTTGGCTCTGGTGCTGCTCCCCGTCTGCCTCTATCTGGGCATTTTCTACGCCCACCTCACCCTGCTGTACCGCAGCGGCCCGCACGACCAGATCATGAGCAGCGCCTTCCAGGCCAGCCTCGAGGGCGGGCTGTCCCGGATCACGCAGGGCCAGCCCCTGGAGGTGGCCTACGGCTCCCAGGTCACACTGCGCAACGTCCTGAGCAAACCGCTTCCTTGCTGGCTTCACTCCCACAAGACCAATTACCCCATCAGaCAGGAGCTGGTGGTCAGCAGCCCCCCGCGGCCGGTGCGACACGGGGACACCGTGCAGCTTCTCCACGGGATGACGTCCCGTCTGCTCAACACGCATGACGTCGCTGCTCCCATGAGCCCTCACTCCCAGGAGGTGTCCTGTTACATCGACTTCAACATCTCCATGCCGGCACAGAACCTCTGGAGGGTGGAGATTGTGAACCGTGAGTCGGAGCGAGAGATCTGGAAGACCATCCTGTCTGAAGTCAGGCTAGTCCATGTCAACACCACGGCCGTTCTGAAGCTGAGTGGGGCTTCCCTGCCCGACTGGGGCTTCCGGCAGCTCGAGGTGGTGGGAAACAAGATCTCCAAGGGCTACCATCAGAGCACGGCCTGGACGGTGGAGGAGCATCGCTACGGGAGAAGTCAAGAGCAGAAGGAGCGGGAGCTGGAGCTCCACACCCCGACACAGATTGACGTGAGCAGAAACCTCAGCTTCATGTCCAGGTTCATGGAGCTGCAGTGGAAGATGCTGACCCTGAAGAGTGAGGAATCCGAACACAAGTACAGCTCCTCCCCCTTAGAGTGGATCACCTTGGACACCAACATCGCATACTGGCTGCACTCCTCCAGCAATGCTCAAATCCATCTGATGGGGAACATTGTGACCTGGTCCTCAGCCAACCTGGGCCTTGCGGTGTTCGTCCTCCTGTTCCTGTGGTACCTACTGAGGCGCCGGCGGTCGATTGAGGACATCCCTGAGGCCTCGTGGTGCCAGTGGGTCCTGGCCGGGGCGGTGTGCGCCGGGGGCTGGGCTGTCAACTACCTGCCCTTCTTCCTGATGGAGAAGACTCTCTTCCTGTACCACTACCTCCCTGCGCTGACCTTCAAAATCCTGCTCCTCCCCATTGTCCTGCAGCATGTTCACGACCACGTCCTGAGCTCCTGGTCACATGTCCTGGGCGGGGTGCTCCTGGCCTGGCTGTCCTCGGTGTTCCTGGTGTATCGTGTCTACAGCCCCCTCACGTACGGCCAGCCGGTCCTGTCCACGGCCGAGCTGGGCACCCTGCGCTGGAGGGACTCGTGGGACATCCTGATTCGCCACCACTGACGTGGCGTCATCGAGCAGAGATGCAGTGGTACCAGACtggtgtggtgggggggcagggttaGGCTCGAGGCTGGCAGGGGATGGGGCACTTACACTATTGACCCCCTTTACCTCTCGCAAGGACAAACACCATGGCTCCACCTCATCCTGTACGGGATCCATGTTTCAGTTCCGGAAAGCTGTTGATCATTTTGGAGTCATAAGACCGTTGTGTGTCTCCAGGAATTTGTCCTGAAGTTGACGTCTTGGCGGTGTTTTTTggaatgaaatgtttttgacaCAAATCTAACCTCAGTGAGGCTGGTGTCTCTGCAGTGCACTTTAGGTACATAACAGTCCAATGATGTGGCCCTGTGTATATCGGTGACTGAATTACGTTTTTTAAGGGAAAagctattttaatttgtttagctCTTGTTAATCGTCTGGATCCCCAGTGTTACAGTgaaatgtgtgcttttaaaGACTGACAGCCCCTAACGCAGCAACAGCACATTTACATTTCCCTCAGTAGAGTCCAACAgtaaatttgtgttttaatgtgaaagTTTGGCTCGAGGACTGTAAAAATTAAACGCATCATTGATTCAAATAATAGTAGGATTTCTGAGGGCCATTTTGTAGAGCGGTTGTTTGTGAGTGGGTGAGGTTTTCTTTAGGACTGTAAGTGAGAATATTCCCCAACTCCCTAAACTGTCAAAACATCTTCAGAGGGAATGTGCTTTAGTTATTCATAGTTTCATGCAAGAATAATGGCTGAAATACACATGTTGTGATCactgtaattgtttaataataaaaactaacaCACTACTAAAGTAGGTGCATTCGCCCTTTTGAAACAGTCTGCTAATATTCATTCTGAAAGGGGAGGTTTAATTCAGTTGAACTAGACTAGCGGTTTGATTGCAGCACTTGCATTGAACAGTAATACATACGACTGTATAAATCCACAGAAAAAACATTGCTTATTCCATTCTTCATGATTCATGATTAGATGTTGAGAATACTCTGAATTAGTCAAACTGTTGttgtgacagaaaaaaaaaaaaaaaaaaaaattaaggtaTAATTCACATACACAAAGAAAATTCCAAAATAGTAGCAAAATTAACAGTTCTAGTGCGTTTGTATTAGGGTTGGGTGATATAGTAGGATCATAGTTGgactggtatttttttttttaaacaatgacaaattattttgtatatgcaGTTCCCAGGGCATAgattaaatggaagaaaaaatatattgtttgaacaaacaaaagtgtttctatcaaatatctatatatatgatGTTCTCCCCTGTCCTCATGGTCTGACCCATGTGACCTGCATAGGGAGGTCTCAGAATTAGAAATTtagttttgtaatttatttatacatttaatgaacatcttcagtttttttttttctttctctgattcAAAACACCAGAAACGCAGCAAAATACCATCATTGCTAAACTGTGTGTGTAACCCAAGGCAGCAAACTGATGCAACACGTCAAATCTGGATATATCGTGATGTATATCTCCCGTTACATCGGGAATACCGCAGTATATGTCTTGCCATAACGCCCACCCCTATTTTGTATCGGTTTAACATGTATTCCTCACGTGGAAGACTTCCGACCTTCATTTTGGGAGCTAATCGAGGAATGCCCTGTGTGCAACTACTCGGCAAAGCCCTGCTGTCAGAGCACAGGTTTAGACGTGTACAGAGCACCACCCGGGTAATACTGCTGGCTGGCTTGCCGCTGAACGGTTACAGAAACATTCCAGAGTCTGGGTCGAAGGGAAGAGCCCAGCGTTACAATCGGgaatgggatttttttattgtgtgccATTTGGAGAGAAGGGTAATGATACCTCCTAAAGaattattactgtaaaattgtatttcataaagccaacatttataaaacaatgtatcatGCTCACCCATCATTGCAGGGTTGTGTGCAACCTGGAAGATCAGAATAAATGTAGGTTCCAGAGCAGGAAAATGTGAATAGGGTTCTGGAAAATCTTGGGAAAATACGACAAAGTGTATCTTGATCAGAGTATACATGGTAGACTGCGACGCACGGATGTAGGTGATTTAGATCTAGAAACACTGGAAGAACAGCAGGCTGCGAGGGGTGGCATCAGTGATTTATAGTGTCTCTAGAGAATGACCGGTCACTCCACATTCAGCCGTCatatcattttagttttaccAACTGAAGAAAAGTAGTATTACCTTTAGGGAGGAAACGGACTCGTTTGCAGCTTTGAAAACCATGAACACAGTCGTCATAACGCAGAGAAAAAGACCGACATCAGGAGCAGGGCTTTCAAAAGGTAAAGCTCTCTATCGACACACGGAGAAAAGTGCCACAATGGTGCACATCCAGGAGGTGGCCATTCGACAGGTCTGTCTTTCTAACAATGTTTTCCTTTGGATTTCAGAAAATGCAAGTTCAATAAGGATTCTGCAGCAATTCCAGATTTAgtttgttgtgctttttaaaaggtgattttcttaatttcttctttGTGACTAAGCGGTTCAAACTGCTGTGTGTTAGAAAGTCAATATGATCATGTGACCAGTATAGATTGGGAATTCAGTCCTGTGTGCTGAGGTGTTCCTCAGTCTGGTCATGAGCAGTCTGCCATTAAAAACTGTAACCAACTGTCTCAGAGTGCGCAGGGAGGGCAGCCAAGCAGGACGGCTGGACAGCGGGCAGCAGCTGGACATCTTAGTGGGGTCGGCTGCTGGGCTCCAGTAGCACCCGTTTCCCTGTGGGGGTTACTGCCCCACTAGCCACGTCACCCTGCTCGGAGAGCGCCCGTTTGTAGCCCCTGCCCTGGCCGTGCCCGTTCACGGCCCCGCGCTGCCACTTGCAGAGGTCTCCATTCAGAATGTCCTGGATGTGCTGCACGATCAGGTTGATGGCAACCATATTATCAACGCCTCTAGGTATGATAACATCTGCATATTTCTTtgtctGCAAGCAGAACTCCTCAAATGctggttttacaaaaatggTGTACTGGGAGAGGATCTGCTCCAGGTCCCGGCCTCTCTTCATGTCTCGGAGAACTCTGCGCGAGAGCCTGACGTCCGAGTCCGTGTCCACGAAGAGCTTCATATGAAACATGTCCCGGATCTCCTGCGAGTAAAACACCAGGATGCCCTCGAAGAGCACCACGTCCGCAGGGTACACTGTGATTGTGTGCTGCAATCTCGAATGGGTGACAAAATCATATGTAGGAACTTCCACCACCTTCCCCTCCACGATGTCTTTGAGGGTTTGATACATCAGCTCATTGTCGAAGGCATCTGGGTGGTCAAAGTTGTACTGGCCCTTGAGCGCCTTGGCTTTCTGTTCGGAGGTCAGCACTCGGTAGAAGCAGTCCTGGCTCACGATGACCACTTTCCTCTGATGATGGTCCACCTCGTTCTGCCCCAGCAGCTCCGTGATCTTCGCACACACTGTGGACTTTCCGCTGGCGGTGCCCCCGCTCACGCCTATCAGGAAAGGCCGGTGACGAGGCCGATCGGACAGCGTCGGCAGCCCGGCAGAGGCCATAGCTGTTCCCGGCCGTTATCGATTCCAACCGAGGCTGTCTGAGTCCTCCGAGGCTTGGTCTAATCGGCAGAAAAACAAGAACCTGCGGTCAGGACTGTGTATCCG

Function

symbol description
uck1 Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK1 (uridine-cytidine kinase 1).

NR:

description
PREDICTED: uridine-cytidine kinase 1

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0016020 membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function

KEGG:

id description
K00728 POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019966 True 5905 mRNA 0.50 25 4861095 4887003

Neighbor

gene id symbol gene type direction distance location
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding upstream 65288 4795433 ~ 4795807 (+)
AMCG00019962 NA coding upstream 92432 4768115 ~ 4768663 (+)
AMCG00019963 NA coding upstream 183210 4658354 ~ 4677885 (+)
AMCG00019957 aif1l coding upstream 210529 4631041 ~ 4650566 (+)
AMCG00019958 NA coding upstream 239562 4603295 ~ 4621533 (+)
AMCG00019969 NA coding downstream 2775 4889778 ~ 4896490 (+)
AMCG00019973 NA coding downstream 102537 4989540 ~ 4992117 (+)
AMCG00019978 slc25a25,LOC106570619 coding downstream 204431 5091434 ~ 5103902 (+)
AMCG00019981 NA coding downstream 218386 5105389 ~ 5115802 (+)
AMCG00019980 NA coding downstream 231157 5118160 ~ 5132090 (+)
G59959 NA non-coding upstream 60812 4796574 ~ 4800283 (+)
G59956 NA non-coding upstream 102448 4758285 ~ 4758647 (+)
G59955 NA non-coding upstream 108199 4750465 ~ 4752896 (+)
G59936 NA non-coding upstream 126420 4707564 ~ 4734675 (+)
G59857 LOC100136012 non-coding upstream 821175 4039515 ~ 4039920 (+)
G60038 NA non-coding downstream 105635 4992638 ~ 5028847 (+)
G60072 NA non-coding downstream 287433 5174436 ~ 5175779 (+)
G60201 NA non-coding downstream 809624 5696627 ~ 5696853 (+)
G60202 NA non-coding downstream 813498 5700501 ~ 5700840 (+)
G60215 NA non-coding downstream 905466 5792469 ~ 5792880 (+)
AMCG00019967 prrc2b other upstream 4166 4823813 ~ 4856929 (+)
AMCG00019934 NA other upstream 1609688 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1891500 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3752099 1074816 ~ 1108996 (+)
G59305 NA other upstream 4415565 441598 ~ 445530 (+)
G60137 NA other downstream 468769 5355772 ~ 5361863 (+)
G60132 NA other downstream 471461 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1219991 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1295696 6182699 ~ 6187889 (+)
AMCG00020052 NA other downstream 2979597 7866600 ~ 7884548 (+)

Expression


Co-expression Network