AMCG00019969


Basic Information

Item Value
gene id AMCG00019969
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4889778 ~ 4896490 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019969
CTGAAAGGAAACAACACCACGGGGTGCTTGCATTTCAGAGTGCCTGGCTTTTGCACAGCCACCCTTTCCCTTTctcttgcttttgcattaaaCTCCAGTCTAGTGGTGGCGAGTCTTGATAGACTCCTTCGAAATGATTGCCTGACCCCCAGACACAGTGTTCCTGCCGTGGGTGTTCCTGCTCGTACTTCCCAATGGAGTCAGGCCAGGGCCCAGCAATCCCAGCAATCCAGCCACAAGACCTGGAGACATCTGTTATAAGGCAGGTAACACAGGACTCTCTGGGACCTGGTGGGCCTTCCCCTACAGCACTCCCCGAGGGGCCGTTGCCACCTGAGAGCAGGCCCACCCCAACAGCACAGGGAGCCATTCCCCCGGAGGTCGGGGCTCAGACCTCGCAGTCCTCGATCTTAACAGCAGGAGGTTGGCAGGAGCCCCCGGCTGCCTCACTGAACGAAAACCTGGGACAGCCTCCACCTTACTACCCACCTGACCCAAAGCTGGTCTACCTGCTGTACCCATCCTCTCCACCACCATTCACAGGACAGATGCCCGTGGTGTGCCAGCCTGGACCTGGCGAGCCCAGCTTGTATCAGCCGCAGTTCATGCCGTCAAATAGCTACCCCTATACTATATACATGAACAACGTGCCGGGGGGGCCCGAACACAGACAGGTACCCAAGGACTACCTGGTGGAGTCGCTGCTGGTCACGATCTTCTGCTGCCTCATGAGCGGCCTCATCGCGGTCATGTACTCCTATGAGACCCGCTCTGCCCTGGGCCGAGGGGACCTGATGGATGCCCAGCGCTCCTCCCAGAAGGCCCGCTCCATGGTGCTGTTCAGCCTGCTGTTCGGGGTGTTCGTGTCAGTGAGTTGGGTCATCTACGTGGTGGTGGCCCTGTACGGTATCTGACAGAGAGCACACGTGTCCCTGTAAGTGGCACAGAGCGCCGACCTTCCCATCGCACCCACCCTACTGCAGCCGACTGGCCGGCCTGGTGTCTTGGCTGCTTATCTCTTTAAATGCAGAATGTGAAGCCTCATtaatcaaaaaatataaatcctgTCAATATTCAATGATTTACAATTATTCTAATGAAAGATGTACTATTTTGCACTTAAGAATCCAACCGTGGATCAGCTCCTCAGGTAGCCGCTGTTCGTCTGATGACTATCTCCTCGGCACGGTCAGATTGTTGACATAACATCTTTATCTTTATCTGAACATGTTGCTAACAGAGCTGCTCCAGacttcttttgtctttttacaaGATCATTTTATCTTTCCAAAACAATCCTAGACATAAAATCTGCTCTTACACATTCACGCTGCATTCCTTGGTGTTGACATGTTAATATGGCTTCTGCGTTTGAAGGGCTACCGCAACATGACTAAGCTCAATAAATCGCACAAAGCCTCATCGATCAAACAAGACAATCGATTAACAACATTCCTACatcaaaatacaacacaatggaGTTATGGGAGATCGAGTGTCAGGGGTTATTTAACATTCGTTTAGGCCTATTTAAGTCCTTCCACCTCATCCTTTCAATTCCAAAATTAACTGCTAAAAGTTGGGATTGATACACCTTATAAGCTATTGGAGAACTCCAAAAATCCTCTCATCTCCTGTGTCTCTATTTACTATTCCCATGTGTAGTTAAAGATTGTTatctttgagagagagagagagagtgctgcaTAAAGCACTTCATAAAATCAAAAACCAAAGGAATTCaagataaattactttttaatttcacagattGGATAATCATGACCtttaattatgaatacatttgcatggaAAACAAGATTTAAGATTTGCACTGTGTGCCTGGGCTACAAATTGTTTAACAGAATGCAGAGGATAAGAAATTGATTTCCAAGGCATCTTACCAGTTCTGTAATGCCTTTCAATCCATTAGCCATCCTGAAATATTCAAGACTAAGTGAATCTTCGCAAGGTCACAAGGCCAGGGTTTTCAGCTACTTTGCTGCTGCAGGGAAATCACATCAGATTTGATCATCAGCAAAGTCCAGGGGAACGGTATGAGGCAGAACGGGCTGTACAGCAAATGGGAAAACACTTCATGTCTGGATCTTTTCCAGCAGTATCTTCTGGCCAGAGTTGGGGCAAATAGGACAGCTTTaaagctggtttcacagattaGCACCAATCTTGGCACTACCCTTACCTAAAATAGCATTGGGTAGTCCATGACCAGTGTTAATCTGTCTGTGAACCCAAAAAACCCAGTatagaaaactgaaatgaaaggatAACAATGACAAGGTTTACCTGCTTCGAATTCAGCTTTAAGTGTAGTTTGTCAGgatgacatttctgaaaatacttCTCCGTCCTGCTCCGGTCTTTTGTTCCAGCCAGGCTTCCTGCATTGGTCTGATTAGCTGATAACTAGAAGCCTGTGACCCTTACACATTTGGAATGCGTGACTACATACAATACTTGATAAATGCGCTGCAAGTCAAGTCCTTGCCGATGATATTTGCCCTGCGTCTGTTGCCTCGGTTTGTGATGTATGATTTAGAAGGCAGCAAATGAAAATGAGGTTTAATGGGACCTAATAGTGTAATGTAAACCACATATGGCAGAATCTTATTCTTCATTTAAGTAAAtgtgattataatattcacttcaacttcttatttttttctatgcttTTCATTAACATTGAACAAGGATAGCGCTTGAAAAAGAAATTAAGTAATGATAgatcattttatattgtatgcTTTGCCTTCCAGATGCTTGATTGTACAATAAAGAAATGGAACATTATATTCTATTCTCAAAGCTGGGACtgtaaataaaattttaaagtaataaatattCATCCTCTTT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019969 True 2874 mRNA 0.45 4 4889778 4896490

Neighbor

gene id symbol gene type direction distance location
AMCG00019966 uck1,LOC102793675 coding upstream 2775 4861095 ~ 4887003 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding upstream 93971 4795433 ~ 4795807 (+)
AMCG00019962 NA coding upstream 121115 4768115 ~ 4768663 (+)
AMCG00019963 NA coding upstream 211893 4658354 ~ 4677885 (+)
AMCG00019957 aif1l coding upstream 239212 4631041 ~ 4650566 (+)
AMCG00019973 NA coding downstream 93050 4989540 ~ 4992117 (+)
AMCG00019978 slc25a25,LOC106570619 coding downstream 194944 5091434 ~ 5103902 (+)
AMCG00019981 NA coding downstream 208899 5105389 ~ 5115802 (+)
AMCG00019980 NA coding downstream 221670 5118160 ~ 5132090 (+)
AMCG00019977 set,LOC105014167,LOC102777863,LOC107083999,LOC100696975 coding downstream 256654 5153144 ~ 5157266 (+)
G59959 NA non-coding upstream 89495 4796574 ~ 4800283 (+)
G59956 NA non-coding upstream 131131 4758285 ~ 4758647 (+)
G59955 NA non-coding upstream 136882 4750465 ~ 4752896 (+)
G59936 NA non-coding upstream 155103 4707564 ~ 4734675 (+)
G59857 LOC100136012 non-coding upstream 849858 4039515 ~ 4039920 (+)
G60038 NA non-coding downstream 96148 4992638 ~ 5028847 (+)
G60072 NA non-coding downstream 277946 5174436 ~ 5175779 (+)
G60201 NA non-coding downstream 800137 5696627 ~ 5696853 (+)
G60202 NA non-coding downstream 804011 5700501 ~ 5700840 (+)
G60215 NA non-coding downstream 895979 5792469 ~ 5792880 (+)
AMCG00019967 prrc2b other upstream 32849 4823813 ~ 4856929 (+)
AMCG00019934 NA other upstream 1638371 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1920183 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3780782 1074816 ~ 1108996 (+)
G59305 NA other upstream 4444248 441598 ~ 445530 (+)
G60137 NA other downstream 459282 5355772 ~ 5361863 (+)
G60132 NA other downstream 461974 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1210504 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1286209 6182699 ~ 6187889 (+)
AMCG00020052 NA other downstream 2970110 7866600 ~ 7884548 (+)

Expression


Co-expression Network