AMCG00019980


Basic Information

Item Value
gene id AMCG00019980
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5118160 ~ 5132090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019980
GTTCCTTGAttgtggtcgcgttcttgttgcgcagatttccgcaggtctgcgcagatctgcagaatccccgcgatcccattggtgcagccgcGCAGACCAGCGCAGAAGTGCGAAACCCTGAGTTGCACGAACGCGGCGCGTCTGCTAACACTACAGTCACGAGTTGCATTAGTAGTGAAAAGCCCGTGGATCCGTCACTGCGCACCTTGATGCATATTAGTCCCGCAACATGAGCTCCCTGGAAGACCTGAGGTCCCGTCTGGACTTGGCTGGGCAGTCCCATCTGCTCCGGTTCTGGCCGGAGCTGAGCGCCGACCAGAGGAGCCGCTTTGTGACCGAGCTGTCTCAGTTGGACCCGGCGGAGTTACGGGCTCACTGTCGGGCCGCGGCGGAGGCGGCCAGCCGGGACTCCAGCTCCGAGCAGCGGCTTGACCAGCGGATGGAGCCCGTGCCTGCGGAGTTCATAGGCGGCGTGAAGCGGAGCGACAAAGAGACCCTGTGTGAGTGGGAAAATGAAGGACTCCTGCAGATCTCCCAGAATAAGGTGGCCGTTCTGCTTCTGGCCGGAGGACAGGGCACTCGGCTGGGAGTCTCATACCCAAAGGGAATGTACGACGTCGGACTCCCGAGCTGCAAAACCCTGTACCACATCCAGGCCGAACGGATCCGGAAAGTTCAACAGCTGGCTGAGCAAAAACATGGATCGAAGTGTACGGTACCATGGTATATAATGACCAGTGAGTTTACACTGGCGCCTACAGAGagtttttttaaggaaaacgATTATTTCAACCTGGACAAGTCTGATGTCATCATGTTTGAGCAAAGAATGATCCCGGCTGTGTCCTTTGATGGAAAGGTCAtcctggaaaataaaagcaaaattgcCATGGCACCTGATGGAAACGGTGGTCTATACAGGGCCCTGACGGAAAATAAGATCCTGCAGGATATGGACAGGCGGGGGATCCAGTACGTTCATGTGTACTGTGTGGACAACATCCTGGTGAAACTGGCCGATCCGGTCTTCATCGGATTCTGTGTGAGGAAAGGCGCGGACTGCGGGGCCAAgGTGGTGGAGAAGGCATTCCCTGAGGAGCCCGTAGGTGTGGTGTGCCGTGTGGATGGGGTTTACCAGGTGGCGGAGTACAGCGAGGTCAGCCCAGAGGTGGCCCGGCAGCGCGGTCCCACTGGAGACTTGGTCTACGGTGCCGGCAACATCTGCAACCACTTCTTCACCCTAGACTTCCTCAAGACGATCTCCGAGAAGTCTGAGAAGATGCTGAAACAACACGTCGCCATTAAAAAAGTGCCCTATGTGGATGATGAGGGCAACCTGATAAAGCCAGACAAACCCAATGGTATTAAGATGGAGAAGTTTGTGTTTGATGTCTTTCAGTTTTCAAGCAACTTTGTGGCCTTCGAGGTGCTGCGGGAGGAGGAGTTCTCGCCCCTGAAGAATGCAGACACTGCGGTGAATGACACCCCGTCCACGGCGCGGCGCTCGCTGCTCTCCCAGCACTACCACTGGGTGCTGGCTGCTGGGGCCGGCTTCCTGGACTCCCAGAACAGGAAGTTGCACCCAAAGCCCCGACTTGCGGATAATGAAGATCCTCCAGCCATCTGTGAGATTTCTCCGCTGGTCTCGTACTTTGGAGAGGTGAGAAGGAAGCAGTGCCTGCAGGACCTGCGGAAACAGGAGGAGAATGGCGAATTCCTGCAGCCTGTGCTGTTTGTCCTGCTGGTGCTGGTCTCGGTGCTGCTGTACTTTGCTGTCTCTCTCATGGATCCCGGGTTCATCCTGTCCGACAGCGACGCCAAGttcacCATTGGCATCAGTGAGGAGCAGCAGGAGATGATTCCCCAGACCTCCAAGGCCCTGCGGCAGCGTCGCTGTGGCTTCTGTCTGCTGCAGcagccaatgagagcgaAGCACTGCCAGACCTGCAAGCACTGCGTGCGCCGCTACGACCACCACTGCCCCTGGATCGAGAACTGCGTGGGCGAGAGGAATCACCGCTGGTTCATCCTCTACCTGGGGGTGCAGCTGCTCGCATTGCTCTGGGGCTTGCACATGGCCTGGTCTGGATTTACCTACGCTCCCACCTGGAAGATGTGGTTCCAGCAGAACAGCTTCCTGTTGACAGCCTTTTCCTTGGTGGCCGTGTTCTCAGTGGTGGTGGTCTTGCTCCTGGGCTCGCACATCTACCTAGTCTCCCTCAACACGACCACCTGGGAGTTCATGTCGCGCCACCGCATCTCCTACCTCAAGCACTGTGGCGTCGACGAGAACCCCTTTGACCAGGGCATCCTGCGCAACCTCTGGGGGTTCTTCTGTGTCTGTCACACCATAGTGTGGGAGAAAGTCTACTTCCGTGAGGGTAGTGACCCTGTTTAGACTTCCAGATTGACCCCCTTTTTCCTTGTCTGTAAGACTACGCATGTTTCCGTAGAGGCAAATGGCTGTGTTTGTGGCAGCTCTGGTGTAGTATTTCTCGCGGTGTAAATGTTGTAATCCTGGTAAAAACTGACACTTTATGCTGCTACTGAACAATCTTGCAACCTTCTTTCTGGATGTAAAGTGCAGTGCTGCACCGATGCAACTTTTTGTGACCGAGGTGGGTCTTATAAGCAGTGGCAGACAATTAATTAGacagatttcagtttttttgttgtcattcgAACACAGAAAGTATCTTAGAAGCGCTCTTTGCTGGCAACAGGCAGTaggcatttaatttatttttctgaattatcagcaacttactaatatatgtaatatgatATTAATGATTCTGTATACCAAATCCCAACCATGCACAAGCTATTTCTACTATCTACTGGCCAAATGGTCTGGTTGCTGTGGGACTTGGGAAAACATAGTAGTCTTAAGGGTaacataaaaccaataaaaaacacaaagtgcTCCTTAGATTGTGAAATGATCAATCATTTAGTTTTTGTGCTTTGCGCGATTAAATGCCAAGCATGTTCCAGTACTCGGCTGGAAGAAAACCTGATCTATACACCTTTTTCTTAGTCATATATCTAAGAGAAGTgtagtttcttttttcttctgcacaCATAATTTGGTTACTTCAGACATTCAATTGCCTACATTGTACCCTATGTTTACCACTGCATTTAATATCATGGTCTGCCACAGTCTCTGAACAATAGCACaattttttaatgtgacaatGAACTCCTGTGTATATAAGGATATGCAGAACAATTGCACACACTTGAATCAGAAATATCAGAGTGTAAATGGTAAATTATGAAGATACGTGACCCCTGCAGCTACACGTTCTGTGACTGGATTTTTTTGGTTTAAGCCGCTATAAAATTGTGGGGGGAGTTCTTCCACAGCTGCCCTCCTGAGATGGCAtcaccaaaaacaaacaggaaaggGTCCTGAAATTAATTGCCCCAATTATCTATGAGTGGTTTTGCAGGCGGCAGCGTCTGGTGTACAGTGACTCAGGATGCTGCACAGCGCTGAGGCGGAGGGGTTTATCAAGGTGTTACTTGGGGTCATGATGTTTACAAAGGTGCTGGAGGAAGGGATTGTTAAAGCTGGGGGGGTGTCGAAGAGCTACAGGGTATTAAAGACAAGCTGCATATCTGCCTAAAATTATAGGGGTTATTATTCCAGCTATCCATTTTATCATATTAGAcagtgcaaaaaaatatttttgtaaaatttaTGTTTTCGATGGttaacaaaatgacaaacaagtaCCTCTGCTGCTTTATAGAATGGTATTGATGTCAGCCTCGGATTAGATTTCCCACCACATCCCTATCGtatcaaattaattcaatgtttAGCATTGTTGAAGCTTAGTATTACATTGTTCCGTTTTTAAATATGGGGTGGGGGAATTTGAGATTCTCGTAAGAGGTTTTTTAAAGTTCAGGCctgaaccaaatcaaaaccttgattGAAGCTTCGCAGTTTCATTTATGGTGTGAGAAACCACTTTCTGCTACTTATAAATGACAACGCGATGGGGTGCAAGTTTGTAATATGTGATTCGCAGGTAGGCAAAAGTTTTGGTTTGGTCTAGGTATTAGGGTAAGTTGTGTTAATGCTGTGCATCTTTGTAACTGCAGATTAAATTGTGTTCTGTACAATATTGTGGGGAATAGGTAAGATCAAAATTagtaaaaaaaagcaataatgtaacaattgttTCACACTTGAGATCTGAATGACAAGTTTTAGTATCTGTGTGCCAGATTTTCACCTCTGAAGCTCTTGGTGTGAACTACATGTTGTGAAATGGGAGCTGTAACTGAACAAAAGCATTTATGCAAAATACATgcaatattttctatatttttcataatcttttaaaattgtattgtacaaTCATTAAAGTGTTTAACTACTCTAGTAGTTTGCCTTGTTCTTAATGGAGAGATCTGACAGACCAATCAATTAAGAGGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00972 UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019980 True 4456 mRNA 0.48 13 5118160 5132090

Neighbor

gene id symbol gene type direction distance location
AMCG00019981 NA coding upstream 2358 5105389 ~ 5115802 (+)
AMCG00019978 slc25a25,LOC106570619 coding upstream 14258 5091434 ~ 5103902 (+)
AMCG00019973 NA coding upstream 126043 4989540 ~ 4992117 (+)
AMCG00019969 NA coding upstream 221670 4889778 ~ 4896490 (+)
AMCG00019966 uck1,LOC102793675 coding upstream 231157 4861095 ~ 4887003 (+)
AMCG00019977 set,LOC105014167,LOC102777863,LOC107083999,LOC100696975 coding downstream 21054 5153144 ~ 5157266 (+)
AMCG00019979 NA coding downstream 29869 5161959 ~ 5166851 (+)
AMCG00019986 NA coding downstream 106898 5238988 ~ 5272193 (+)
AMCG00019988 NA coding downstream 188845 5320935 ~ 5333031 (+)
AMCG00019991 NA coding downstream 210486 5342576 ~ 5346898 (+)
G60038 NA non-coding upstream 89313 4992638 ~ 5028847 (+)
G59959 NA non-coding upstream 317877 4796574 ~ 4800283 (+)
G59956 NA non-coding upstream 359513 4758285 ~ 4758647 (+)
G59955 NA non-coding upstream 365264 4750465 ~ 4752896 (+)
G59936 NA non-coding upstream 383485 4707564 ~ 4734675 (+)
G60072 NA non-coding downstream 42346 5174436 ~ 5175779 (+)
G60201 NA non-coding downstream 564537 5696627 ~ 5696853 (+)
G60202 NA non-coding downstream 568411 5700501 ~ 5700840 (+)
G60215 NA non-coding downstream 660379 5792469 ~ 5792880 (+)
G60228 NA non-coding downstream 858140 5990230 ~ 5990491 (+)
AMCG00019967 prrc2b other upstream 261231 4823813 ~ 4856929 (+)
AMCG00019934 NA other upstream 1866753 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 2148565 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 4009164 1074816 ~ 1108996 (+)
G59305 NA other upstream 4672630 441598 ~ 445530 (+)
G60137 NA other downstream 223682 5355772 ~ 5361863 (+)
G60132 NA other downstream 226374 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 974904 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1050609 6182699 ~ 6187889 (+)
AMCG00020052 NA other downstream 2734510 7866600 ~ 7884548 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030189 zdhhc12b coding NC_007116.7 CM002889.2 31819436 ~ 31826573 (+)