AMCG00020010


Basic Information

Item Value
gene id AMCG00020010
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6280523 ~ 6291842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020010
ATGGCCCGGCACAACccctgcacacagcacagaggtcTGCGGgagaaagagaagaagtACATGCTGCCAGTGGACAACCTAAAGCTGAGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACATCTTCGCCCTCTTCAACACCGAGCAGAGACAGATAATAAATCAGGAGAAAAGCTTCTGTGCTGCCGTGCTGAAGAGACTGTTAGCGCCCTTGATGCTCACAGCACAAATGAACAGCAAGCAAAGCGAGTCTGAGGAGAATGGCTCGGACAGCTTCATGCACTCCATGGACCCTCAGCTGGAGCGGCAGGTGGAGACCATCCGCAATCTGGTGGACTCCTACATGGCCATCGTCAACAAGACCGTTAGGGACCTCATGCCCAAGACCATCATGCACCTGATGATCAATAATACCAAGGAGTTCATCCACGCAGAGTTGCTGGCCAACCTGTACTCGTGTGGAGACCAGAACACCCTGATGGAGGAGTCGGCGGAGCAGGCCCAGCACCGTGACGAGATGCTGCGCATGTACCACGCCCTGCGGGAGGCGCTCAAGATCATCGGCGACatcaacaccaccaccaccagcacgCCCATGCCCCCGCCTGTCGACGACTCGTGGCTACAGGTCACTGGCCAGCAGTCCGGCAGGAGGTAG

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020010 True 660 mRNA 0.57 5 6280523 6291842

Neighbor

gene id symbol gene type direction distance location
AMCG00020008 dnm1a,dnm1,LOC108423695 coding upstream 13323 6224949 ~ 6267200 (+)
AMCG00020009 NA coding upstream 68059 6202008 ~ 6212464 (+)
AMCG00020004 NA coding upstream 153117 6126999 ~ 6127406 (+)
AMCG00019999 NA coding upstream 248483 6023287 ~ 6032040 (+)
AMCG00019998 LOC106533851 coding upstream 307051 5961221 ~ 5973472 (+)
AMCG00020007 hspa5 coding downstream 46688 6338530 ~ 6341784 (+)
AMCG00020006 ppp6c,Ppp6c,LOC102783418,LOC102313764,LOC106570422,LOC107587376,LOC100701794,LOC102784428 coding downstream 56745 6348587 ~ 6358927 (+)
AMCG00020014 LOC106570398 coding downstream 96564 6388406 ~ 6412281 (+)
AMCG00020015 NA coding downstream 123923 6415765 ~ 6443392 (+)
AMCG00020016 rpl35,LOC106570388 coding downstream 171750 6463592 ~ 6466574 (+)
G60276 NA non-coding upstream 100888 6178545 ~ 6179635 (+)
G60272 NA non-coding upstream 108043 6165113 ~ 6172480 (+)
G60273 NA non-coding upstream 119952 6156793 ~ 6160571 (+)
G60270 NA non-coding upstream 125324 6154947 ~ 6155199 (+)
G60257 NA non-coding upstream 180622 6099476 ~ 6099901 (+)
G60324 NA non-coding downstream 68002 6359844 ~ 6382808 (+)
G60354 NA non-coding downstream 190992 6482834 ~ 6483995 (+)
G60363 olfml2a non-coding downstream 278538 6570380 ~ 6572561 (+)
G60431 NA non-coding downstream 660611 6952453 ~ 6955093 (+)
G60566 NA non-coding downstream 1497031 7788873 ~ 7792223 (+)
AMCG00020000 NA other upstream 92634 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 166327 6106994 ~ 6114196 (+)
G60137 NA other upstream 918660 5355772 ~ 5361863 (+)
G60132 NA other upstream 921158 5358464 ~ 5359365 (+)
AMCG00019967 prrc2b other upstream 1423594 4823813 ~ 4856929 (+)
AMCG00020052 NA other downstream 1574758 7866600 ~ 7884548 (+)
AMCG00020053 NA other downstream 1752433 8044275 ~ 8051147 (+)
AMCG00020105 rpl28,rl28 other downstream 3492275 9784117 ~ 9788052 (+)
AMCG00020122 urm1 other downstream 4188692 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 4446660 10738502 ~ 10755375 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01101024_00001263_00003768 DNM1A, DNM1 coding CI01101024 null 1263 ~ 3768 (+)
rainbow trout (Oncorhynchus mykiss) G387939 LOC106567059 misc NC_048569.1 CM023223.2 30168119 ~ 30211886 (-)