AMCG00020052


Basic Information

Item Value
gene id AMCG00020052
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7866600 ~ 7884548 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020052
ATGGCAGACGTACACGTGGTTCCCAGTGGGAAGGTGTACCGGCAGATCTTCGACGCTGAGGTTCAACTGGTCAGGTCCCTGGGCGAGGCGAGGAGAAAGCACATTCCCTATGACGTGTCTCTGGACAGTGGGAAGGACCCCCTCCTGAGGGGCGCAGACACTGCTGGGGCAGCTGGTCAGTGGCAGGGCGTCTGGCCCCAGGAAATGACGCACCTTTCTTCAGGGGTCCCAGGTGTTTCCAGGGAACTGTCGTCATGTGTTAGACGCAATGAGGACAACGAAGACCAGATTGCGGCTGAGGAAGTCAGGGGTCTTTCTGATGTCATTGAGAGCAAGCGACAGAGACACACCGAGGCAATGACTCAGCTACACCAGGAGCTTGTTACGCTCAGTGAGGTATGTACAGAGAGCAAGACTGTATGTGTCACTTGTGAGTGCGGCTTGGTAGATTTTGAACCCCGATTTAAAGAGACTGGAGAAAGCCTCCTGCGAACGCTGGCCCAATCTGATAAAGAAATTGAGCAGCTGTTGCGGAGGATTGACAGTTACCCTGATCTGGAGACCTTCACATTGCAGAGTCTGCACAAGTTGTGGGACAGTGTTAACGGAGAGTCACTGCAGAGGAGAAAGCACATTCAAGATCTTGATGAAACTTACCAAAAATATGAATCAGAGAGAGCTGTGATGATTGGAGGAATACTGAAGAGATATACCAAGATGCTTGAGAGAATCAGCTACCTGATGCCTGCTGATATCCACCGGCTTATTGATAAAGAGGCCATgATGATTAACCAGGCGCTCTTGGCGAATCGGCGGGCCGTGGGGCGGCTGTTTGTCAATCTGGTGGAGAGCAATTTACAGAAGGAGCTCTCTCGGAGGCTGAGCTGGGAAGGCAGGCTACAGGACTGGAAGAAAATCAAGATACAAGCCTCAATCGACCAGTTCAAAGTGTTCATGAACAGCCAGCGGGTCCAGAACCCCGAGGCGGTGCAGAGGACCTTGGCCTCAGTGAGGAAGGCACAGCAATCTCTCACAGAGCGACGCATGAGCACGCTGCAGTCCCTCAGTAGTTCAATCAAACCCCCAGTGTGCACTAAAGCAGTGGTATCAGAATGGTACTCATCTCTGTCAGCTGTTAATGAACAAATAGATACCCTGCATGTTGATACTGTGACTGCACTACGTTCTTCTTATGAACGTGTTTGGCAGGACTGCTTGGCAGAGATTGAGAAATTCAAGGAGGAAGTGAGTGCTTGTGCCCTGACTGAGCTCGAGATCCAGAGCATTGTGACCAGGGAGCTCCTGCCCCTGGTGGGAGCCTCTCAGAGCCAAGAAGAGGCACGGCTGGAAGACATGGATGGAAAAGAAGCTAGTCTGGATATCATTATGGACAAATTGAGGCAGGAGAGCACAGAGGAGGCCCTGAAGACTGCTTTGGAAAAGGCACTGAACTTTctggaggaaattaaaaagggGTATGTCAGTTTCTACAGAGATCAGGTTGATAAAGTCGAGTCATACCCTGCTATGGTGCTAGAGGATCTGCATAAGTACAGCACGGCTGTCAGTAAATTCTTCCATGTGAAGGAAATCTACAAGCAGGAAACTGAAGGACACATCAAAAAAAGTCACATGTCACAGGAGCGCGCGGATCTCCTCATCCCGTCCCTTGAGGATTCGTCAGAATCCCAGAATGACCCCCACAATCCTTCTCAAATAAGCGAGACATTTACAACATCCAGAGGCAATGTCTACAGTGTCTGCAGCTCGTGTGTGCAGGTGTCTGAGGATGTGGCACGTGAGAAGTCCACTTCATACATGGAATTGGCGCTGTTCCCTGGCAGTGCCCAGCTTACAGAGCTACAGAACAGTGTGAGGCTGGCATTCTTTGAGCACTTGGAGGACAGATATGAAACCATCCCGACCAACAGCGTGAACATCGTGGCGGCCAAGAAAGACGAGCTGAAATCTGAGCTGGAGCTGCGCTTGCATCTCCACCAGCCACGGGCCAAGAGGATCGAGATGGACATTCACAATGTTAGATCGGCGGAGCTAGTGCTTCACAGGGACAGAGTGGAGAGGCACTGTAAGGGCATCACAGAGGCGTTGAATGCTTTAAAGACGGAGTTTGTTGCGCTCCGTGATGAGCAGAAGAAGCTGACTGAGGATTTCCGGACACACATCTACAGCATGGAAAACGTCTTCATAAATGCGTCCAAGTCTAGCGTCCTGGTTGGTCTCTGCAGCTCTCTGCACACAGACCTGGATAAACATCTGGGCCTGATCCAGACGTCCCTGCGTCAGTACAGACAGAAACTGGAATCCACACTCGGACGTCTCAGAGAATCAAATGCAGAGTTTATCAAGTCCTTCAGGTTGTTTTCTGAAGGGGGGAATTTTACACCCGAAGAGATCGAAGTGTTCCAGAGGCGACTGGAGAAAACATCCAGTCATATTGATTCCACTGATGAGCTGATCATGTTGGATATGGAAGGAATGGAGTCAAAATGCCTGGAACAGGCAACAGAAGTGATCAATAAGTTTGAAGACAAATTCCACCATCTCACAGTAGACCTGAACTTCATGGAGAAGATCCAGAGATTGCTGACCAACACTCAGGTTGAGATTAAATCGGAGGTGACTAAAAGTAACAAGCAGATGGAAACCTTGAACACCTATTTGTCACAGTTCGAGAGCAAGATAGACGCATGTGCCAAGCTCAATATTGACAAGGAGGCTGTAACTCCTGACGATCTTCATGTTTTTACCCAGTTCATCATGGAAGAACTGAAGAAAAGATGCCAGTATCTGGAATGCTTGACAGATCTCTTCTCCACAGCCCTGGCCCCCGAGGCTCCTCTGCAAGGCCCTATCGCTGCAGCTGCCCGCACCGAGACCCTGAAACTGGAGAAGCTGGGGGCCCACAGCACAGACAGTCTGCTGCAGCCCAGCAAGATGGGCCGGCCAGCCACCGAGGACGTGGCCGTGGGTGTCATCCAGCATATATTACAGAACCTGGCAGGCCTCTCCGGCAGCCGGGACCCAGGGTGCAGGCCTGTCCCCGAGCCGGCCGCCCAGCGAGGGGGCTGCCGGCCTCAGATCCACAGGCTCAGCCACTGGCCTGCGAACAGAGGCCCCTCTCAAAAGAGTTTCTTCCACGTGGATTTctacaaaaagaaagagagacggGCCATCACTCGACCCCAGTACCTGCAGGAGACCTTTGAACATTGCGCAGAGGTGCTGAACAGCAAGCTGTTGTCTTACCAGAGCCAAACCCTGGCCTATCACAACGCTTGCCTCCAAGAGTTCAGAGAGCAGCTGCGGCAGGCCGAGCGTTGTCTGTCTGCGGTGCCGGGCCGGCTCATCGGACACCTGTTGGAGCAGCACCTCCATGAGCTGGGCCAGGCCACCGGCCGCATACGCCACCACTTCCGCCTGGCACAGCAACAGAGCGAAGACAGACAGAATGATCACTGGAATAAACTGCGACCATCTCTCGGACACCCGGACAACGTGAGCAATCTTCAGAGCTTGTGTagcctggaggaggagagacaggAACAACAGGGGCATCTGATTGACTCCACCAAAGGAGAGCTACAGAAGTGTGTGGAGCAGCGGGCTGAGGAGTTTGTGGCAGTGCTCGCTGCCCTCACTGAGCGCCTGCTGCTCCTGCTCGACGACTTTCTGACTGTCGATGACGTCCAGACTGGCCaaactGAAGCCGTGAAAGAAAAGACCAGCACTCTCATCCGCCGAAAACAAGCTGGTCTCCCTCTGGAGGAGAAACACCAGATGCCTTTAATACAGAGGGACAGCAGaacTTGGCCCGGAATTCCTTACTTTGAATCCAGAGCCAAAACCAATGGTGGGGATCCCCGCAGAGAAACAGCCTCAGTTAAAACAGCAAAGACAACTCTGGGCCACTTGTCAGCAGTGGAAGCAAGAGACGCGGCACATCAGAGATTTCAGGGGGAGTATAACAAAGAAACCCTGCAAACGGAGGAGGAGAGCGAAGCCCAGTGGAGACGTGCAAGGCGGTGGGAGGCCAGCTGGAGAGAGGCAGTGATGAAAATCAAACAGCTGTATTTGTGAAGGTGTGTTTAGTTGTTTCAATCAATTCTAAGAGAACAGCTGTATTTCCCAATGCAATATtgaatacattcaatatttttccGCTTCACTTAAACAGCTTACAAATGTACCAAACCATGCCTGCAGGAACTATTGCAGAGCACTGAGCAGAACCTTGCATTGTGATGGAAACCTTACTCGGCTATAACTGGCTGTAATGGTGGGCTCAATATTAGTGACATAATGATATTGAAGCAAACGAAATAACCAAACTGTCAAGTACGCAAAAAAAGAATGTTTATTTGCTGTAAAAACCTCCATTGATCAAAATTGATCATTCAATAAAAGTACACATAAttaagattgtttttgtttaaaggttTTAATGACAGGACTTAAAATATCTATAACCACATGCAATGGGTTACCAATATGCAACCAGCCACTAAACCCCCTTTTCCAGCATCAAACCACCCCGACATGGTCTTGCTCTTAGCACTAACCGACCCAGGGAGACTTGTTGGGGGGATTTCAGGATTTGCCCATTCATACACCCGCTCTGTATGGCCTAGGCAACTCTCAGTCTGCACTCGCACATCACACAGTTGTCACCAGTGCTGACTGGACATTGTGTAGGGACAGTGAACAGGGTGGTTATAAGGGCCTCCCCTCTGTACTGTGGTCAAGATCCAGATTAAAGGTGCGGCGTGCCTCTGGAGTCACATTCCGAAACAGGAACACACTGCGGTTGGGAGTTTctcttaaatataaaaaaataaacttaaattaaataatttggtgTCCACAACCAGTAAACACTTAGAAAAATCAGAGCACCAGACGTTGGTAGATAAATAAGGCAAAACCACACAAAGGACCTTTGCACCttgcacaaaaaaataataaaacggaTGACTGCGAGATGGGATTGAAGTCTGGAAACCAAAGTCAAATTTGGCATTGATTACAGTCCGCTTGTTTTTCAAGCACTGAACTAGAGTTCCAGTCCAGTGCTCCTCTTTCTAATCAGGGGGTTTTACTTGTTATctcagtgcaaaaaaaaaattaaacaaaaaatacatattgcgCCAATTTCAACCATATATCTCACAATGGACAAAAgtacacaaaaataatgaaatggtcaCCTGAAACCAGTTAGATCCAAATGAAAAATGGTCAGCAATATGGGGAATCCAAGGATATCAAGTGTGCCGAAAAACTCACACCCCGGAACTATGGCTAAAGGAATAGCAGCCATGTCTGACCCTTGCATTCACCCCAAGGCACACCTTAAGCCCACAAAGGGAAGGCATGCGCTGAATCACAGAGTTGGCTGCTGGATGAACTCTCCTCCACTCAGGACTGAAAAAGATTGAGACCTCACTCAGCATTTTCAAAGCACGATGTATCAAGTGCATCAGGCACAGGTCAAATTCTTGAGTTTTGTGATTCTGTACATTAGTAATTGCATCCCTTGCCATTTCATCACATAGATCATAGACTCAAATTCCCTGCTGACCCTTCAGTTATTTTTATGCATGTATACACACGTTTTCTATGCTCTTACACTTTGTCccttatatattcatatacattgtGGCATTGCATCAGCGTACGTGACACACAACAGATATTTGTTTCAACCATTGAACAAAACACTCAGATTACCCAAATACGGGGAAGATCTACGTATGCATGAAGTCATGATTGAAATCTCCAGAGCGGCATAATTTCTGAATTCAAGAAGGAATCtaatatttccatttcataATAGTAGATCTAATCTTTTCTATTCTTCATATAAAGtctgaatatataaaatacatatatatata
>TU75830
cagaacTTGGCCCGGAATTCCTTACTTTGAATCCAGAGCCAAAACCAATGGTGGGGATCCCCGCAGAGAAACAGCCTCAGTTAAAACAGCAAAGACAACTCTGGGCCACTTGTCAGCAGTGGAAGCAAGAGACGCGGCACATCAGAGATTTCAGGGGGAGTATAACAAAGAAACCCTGCAAACGGAGGAGGAGAGCGAAGCCCAGTGGAGACGTGCAAGGCGGTGGGAGGCCAGCTGGAGAGAGGCAGTGATGAAAATCAAACAGCTGTATTTGTGAAGGTGTGTTTAGTTGTTTCAATCAATTCTAAGAGAACAGCTGTATTTCCCAATGCAATATtgaatacattcaatatttttccGCTTCACTTAAACAGCTTACAAATGTACCAAACCATGCCTGCAGGAACTATTGCAGAGCACTGAGCAGAACCTTGCATTGTGATGGAAACCTTACTCGGCTATAACTGGCTGTAATGGTGGGCTCAATATTAGTGACATAATGATATTGAAGCAAACGAAATAACCAAACTGTCAAGTACGCAAAAAAAGAATGTTTATTTGCTGTAAAAACCTCCATTGATCAAAATTGATCATTCAATAAAAGTACACATAAttaagattgtttttgtttaaaggttTTAATGACAGGACTTAAAATATCTATAACCACATGCAATGGGTTACCAATATGCAACCAGCCACTAAACCCCCTTTTCCAGCATCAAACCACCCCGACATGGTCTTGCTCTTAGCACTAACCGACCCAGGGAGACTTGTTGGGGGGATTTCAGGATTTGCCCATTCATACACCCGCTCTGTATGGCCTAGGCAACTCTCAGTCTGCACTCGCACATCACACAGTTGTCACCAGTGCTGACTGGACATTGTGTAGGGACAGTGAACAGGGTGGTTATAAGGGCCTCCCCTCTGTACTGTGGTCAAGATCCAGATTAAAGGTGCGGCGTGCCTCTGGAGTCACATTCCGAAACAGGAACACACTGCGGTTGGGAGTTTctcttaaatataaaaaaataaacttaaattaaataatttggtgTCCACAACCAGTAAACACTTAGAAAAATCAGAGCACCAGACGTTGGTAGATAAATAAGGCAAAACCACACAAAGGACCTTTGCACCttgcacaaaaaaataataaaacggaTGACTGCGAGATGGGATTGAAGTCTGGAAACCAAAGTCAAATTTGGCATTGATTACAGTCCGCTTGTTTTTCAAGCACTGAACTAGAGTTCCAGTCCAGTGCTCCTCTTTCTAATCAGGGGGTTTTACTTGTTATctcagtgcaaaaaaaaaattaaacaaaaaatacatattgcgCCAATTTCAACCATATATCTCACAATGGACAAAAgtacacaaaaataatgaaatggtcaCCTGAAACCAGTTAGATCCAAATGAAAAATGGTCAGCAATATGGGGAATCCAAGGATATCAAGTGTGCCGAAAAACTCACACCCCGGAACTATGGCTAAAGGAATAGCAGCCATGTCTGACCCTTGCATTCACCCCAAGGCACACCTTAAGCCCACAAAGGGAAGGCATGCGCTGAATCACAGAGTTGGCTGCTGGATGAACTCTCCTCCACTCAGGACTGAAAAAGATTGAGACCTCACTCAGCATTTTCAAAGCACGATGTATCAAGTGCATCAGGCACAGGTCAAATTCTTGAGTTTTGTGATTCTGTACATTAGTAATTGCATCCCTTGCCATTTCATCACATAGATCATAGACTCAAATTCCCTGCTGACCCTTCAGTTATTTTTATGCATGTATACACACGTTTTCTATGCTCTTACACTTTGTCccttatatattcatatacattgtGGCATTGCATCAGCGTACGTGACACACAACAGATATTTGTTTCAACCATTGAACAAAACACTCAGATTACCCAAATACGGGGAAGATCTACGTATGCATGAAGTCATGATTGAAATCTCCAGAGCGGCATAATTTCTGAATTCAAGAAGGAATCtaatatttccatttcataATAGTAGATCTAATCTTTTCTATTCTTCATATAAAGtctgaatatataaaatacatatatatatatatatatgtttttttatcttgttcTTGATGGTTTTGAAATTTCTTATTTAGGATtcctaaaaaaaatgttttcagcaaCAATATTTGCACTGATCGTCTGTCTATTTCCAAGTGCAGGGATCGGGACTTTGGTTTGGAAATGTGTTCATTGCAGAGTCCTCATGCATACCTAGACCTTCTCCTGACCGCAGACACAGGATGGCAGATGCAGTACCCCTCGGCCGATCCCAGCTGAATTTGACTGTTCGGGTTCTCCTGGCATCGAAGGACTGGTGTCAAGAGGTGAAGTCAGACCGATGCTCTTTAAATATCGCGAAAGGCTGCCAATCGTACGGACCCGTGACAGTTGTGCAAATTAAATGACTGAGGACCGATAACTGAGTTTAAAGAGTTTTGACTACTTTCAAggcaccatttttttttttttagagcaTTCCTctggaagttaaaaaaaaacaacaacctcccGGGTCTACCTCACACCAGGCCACAAGGCAATACCATGACTACTAAGGCATATTCGCTCAGCAAAGACATACAACGTCCCTTTTTTGATCTAGCACTGTTTTTGTAGAATTTGtaacattattttcagtattattcTCTACtacaaatcaatttttaaataaattatgaataattacaATACCCTTCCTGCAGAGATCCTGCATATATCAAGGACACGATTACTGTACAGCAAAGTGAAATTACACTTTCATAGCATGCTGGGGATTCCTGGCCAAAGCATGGTGGTTTCTCTCATTTGTTTAAAGGGAGAATTTCCTTCTCCACAattcccccccgccccctttttctttgcaaaggGGTAGTGCATCTTCAAATCCAGTTTTCTTGACAGAgctcatttgaaaaaataaagcagattcATACACAACCAAAAACAGAAGTACAAATGTTCACTTTAAAATGCGTCTGCTGATGCAAGTCCAGCGAGGTGTTTTTCCGCAGACAGCTTCCTTTGAATCTCAGGAGTTCCCTCGGAGAGCTGTGAAAGGAATGGCTTTTGTTGGAAATGAAAGAATGACATCACAGCCACCGTGTCCAATCATTGCACTCCTTCTTCGTCTACGTAGGTCGAGGGAAACCAGCCAATCTAGGAAGAAGAGGGCAAAACACGAATATGAAACAAGAATGTGAAGTCACACTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020052 True 5915 mRNA 0.48 32 7866600 7883377
TU75830 False 3265 lncRNA 0.41 2 7881011 7884548

Neighbor

gene id symbol gene type direction distance location
AMCG00020048 NA coding upstream 663 7858724 ~ 7865937 (+)
AMCG00020049 dnlz coding upstream 8068 7856838 ~ 7858532 (+)
AMCG00020046 NA coding upstream 12223 7846888 ~ 7854377 (+)
AMCG00020045 NA coding upstream 21970 7830898 ~ 7844630 (+)
AMCG00020044 NA coding upstream 38537 7823339 ~ 7828063 (+)
AMCG00020056 wdr5,LOC107741954 coding downstream 190634 8075182 ~ 8086290 (+)
AMCG00020060 col5a1,LOC108413571,LOC107675758,LOC107720871 coding downstream 565244 8449792 ~ 8451164 (+)
AMCG00020059 LOC106568813,LOC106562962,LOC107675758,LOC103360605 coding downstream 591080 8475628 ~ 8532226 (+)
AMCG00020063 olfm1 coding downstream 716255 8600803 ~ 8618634 (+)
AMCG00020065 NA coding downstream 904020 8788568 ~ 8800980 (+)
G60566 NA non-coding upstream 74377 7788873 ~ 7792223 (+)
G60431 NA non-coding upstream 911507 6952453 ~ 6955093 (+)
G60363 olfml2a non-coding upstream 1294039 6570380 ~ 6572561 (+)
G60354 NA non-coding upstream 1382605 6482834 ~ 6483995 (+)
G60324 NA non-coding upstream 1483792 6359844 ~ 6382808 (+)
G60633 NA non-coding downstream 169920 8054468 ~ 8056105 (+)
G60719 NA non-coding downstream 916621 8801169 ~ 8801578 (+)
G60729 NA non-coding downstream 922454 8807002 ~ 8809869 (+)
G60753 NA non-coding downstream 1001639 8886187 ~ 8886456 (+)
G60836 NA non-coding downstream 1365052 9249600 ~ 9249814 (+)
AMCG00020000 NA other upstream 1678711 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 1752404 6106994 ~ 6114196 (+)
G60137 NA other upstream 2504737 5355772 ~ 5361863 (+)
G60132 NA other upstream 2507235 5358464 ~ 5359365 (+)
AMCG00019967 prrc2b other upstream 3009671 4823813 ~ 4856929 (+)
AMCG00020053 NA other downstream 159727 8044275 ~ 8051147 (+)
AMCG00020105 rpl28,rl28 other downstream 1899569 9784117 ~ 9788052 (+)
AMCG00020122 urm1 other downstream 2595986 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 2853954 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 3061044 10945592 ~ 10969598 (+)

Expression


Co-expression Network