AMCG00020068


Basic Information

Item Value
gene id AMCG00020068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8948462 ~ 8952021 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020068
atgttgaaaaacaacaagtatGGATATGAAAATGTGGTTCATTTACTTCTGTGGTCACTAGATTTACTGCACAGCAAGAACAGACATATTGATTCAAGTTGTGCAGCTATGACATATTTTTGCTACATTAATGCATGTTTTGTCTATTTTGCCTTAGGTTTGGAGGCTGACCTTGAGAAGAAACTGTTTGGGCAGCATGTGGCTTCTAAGGTGATTCTTAAAGCAGTGACTGACTTCATGGAGATCAAAAACCCTACGAAGCCACTTGTCCTTTCTCTCCATGGGTGGACAGGAACGGGCAAGACCTTCATCAGCCAACTAATAGCTAAAAACATCTACAGGAATGGGATGAAGAGCAGCTTTGTGCACATGTTTGTGACCACTAATCACTTTCCTCACCCTGTTGAAGATCAAACCTATATCGCACAGTTGCAGCAGTGGATTCGAGGGAATGTGTCCAGTTGCCCTCAATCTATGTTTATATTTGATGAAATAGATAAAATGTATCCTAGACTTATGGACAGCATAAAGCCATTCTTGAATGATGTCTCCTATCACCGAGCTATTTTCATCTTTCTGAGCAATGCAGGTGGAAAGGAAATCAATGACGTGACCCTGAGATTATTGGAAGAAGGCAAAGAGAGAACAGACATTCAGCTGAGAGACCTGATGACATCATTGACCCACAATCTCTCAAAAAACGAGAAAAGTGGATTTTGGCACTCCAGCCTAACTGGTAATAACCTGGTGGACTTTTACATTCCCTTCCTGCCCCTGGAGCATAAAcatgtgcgcatgtgtgtgttaGCCGAGATGGAGGCCCGCAAATTGAAGCTTGATGAGAAACTCGCTAACGACATTGCCAATAAGTTGAACTATTTcccagagaaagagaggatgTTCTCTGTCACGGGATGCAAAGCTATTGGTGCAAAACTAATTTATTACACATAGGGATTCTGGAGGAGGAAatggcaggggtggggggggaaagcCTTCCAGAGGCCTTGCATCTTAAACTGTCAAAGCAGGAGAATTCAGTTGTGATAGTACAGGAGAGCACATGGTGGCCCTGTTTAATAACTCTTGATTTGATTGAAACTCTTTGCTCTCTTGTCCTACTATAAATGCATCAACCTTTTGtacacctttttatttttttttgctattcACGATAAGATTTATTCCCaagatttgttttccccaaTTTTGTCTGCAAAAGAATAGCAATTTATGCAACATTGTAAATCGCTGAAACTGGAAGTGGGTTTTGGAAGGCTTTATCAATTCAACTCTGTCATGCATGTGACTTGAACAGTGATCTTGTGGAAATAATCTGTATTAATAGGCTGAGATATGAAAGGATTATCCAGTGTAGTCATGTTAATTggtcatttaatttgtaatggcCAAAAAGGAATTCATATTTGATGTCTGTTCAGGAAATATCATATCACTATGCTGTCTTCCAAAATCTTTCTTCTGTTCCCACACAAAACCAATTAATGAAGTAAACTCAAACAAAGGTCACTTCTGATCATCTACATACATTACAGAAGGTTTTGTAGAGCTCTTTAgtttgatgtgttttgttttttaactggaaGGAAGATTccaaatttaacaaaaacaggCCGGTGAAGATTCTCAGTAGCACAGAAAGGCTTTTTTATAGAGCACAATAACAACTTAATGAGACTGTGGGCCATATTCACAAAACATACTGCTGCACCATTAAAACTTGTTTTCCTACTGAGGAAAGAAATGAGTCACTTGGATACTTGAAGTGCTCTTTTAAGTTAacataagcaaattaaattaatatggcCCTGCAAGTATAATCCTAGTCCTGTGAGAATtactagtattgatcagcaactatatttaacttttacaaaTTTGTTAATTTAGGCTAATATAGGGCATGTGTGCATCTGCCTTTTTTCctgtgtcttgagaagtctgtagcagactCAGTTCtcaaatcatttgtttttccgTACCTTCCCACTTTCAGGGCATGAGGTAAACATGGTTACATTGCTAACAAACCTTTAGGTCACACAAGTGGTCAGGCGGAATTGTACCAAAGGTTATGACATATCGACTCTGGCTATATTTTTGATGTggccaatataatctgttagacTTGCATGTTAATTAGCATTTAATGCATATTCTTCAAATCATTCCCATGTATTA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020068 True 2202 mRNA 0.39 4 8948462 8952021

Neighbor

gene id symbol gene type direction distance location
AMCG00020069 NA coding upstream 27910 8914198 ~ 8920552 (+)
AMCG00020070 agpat2,LOC103360602 coding upstream 93774 8839761 ~ 8854688 (+)
AMCG00020064 mrps2 coding upstream 143039 8803438 ~ 8805423 (+)
AMCG00020065 NA coding upstream 147482 8788568 ~ 8800980 (+)
AMCG00020063 olfm1 coding upstream 329828 8600803 ~ 8618634 (+)
AMCG00020072 NA coding downstream 39972 8991993 ~ 9000002 (+)
AMCG00020073 NA coding downstream 65321 9017342 ~ 9017787 (+)
AMCG00020071 NA coding downstream 65788 9017809 ~ 9019179 (+)
AMCG00020076 NA coding downstream 163636 9115657 ~ 9118744 (+)
AMCG00020074 NA coding downstream 178661 9130682 ~ 9137750 (+)
G60753 NA non-coding upstream 62006 8886187 ~ 8886456 (+)
G60729 NA non-coding upstream 138593 8807002 ~ 8809869 (+)
G60719 NA non-coding upstream 146884 8801169 ~ 8801578 (+)
G60633 NA non-coding upstream 892357 8054468 ~ 8056105 (+)
G60566 NA non-coding upstream 1156239 7788873 ~ 7792223 (+)
G60836 NA non-coding downstream 297579 9249600 ~ 9249814 (+)
G60886 NA non-coding downstream 455636 9407657 ~ 9408017 (+)
G60888 NA non-coding downstream 471316 9423337 ~ 9423559 (+)
G61064 LOC103376870 non-coding downstream 1325445 10277466 ~ 10346391 (+)
G61095 NA non-coding downstream 1554378 10506399 ~ 10507213 (+)
AMCG00020053 NA other upstream 897315 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 1063914 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 2760573 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 2834266 6106994 ~ 6114196 (+)
G60132 NA other upstream 3589097 5358464 ~ 5359365 (+)
AMCG00020105 rpl28,rl28 other downstream 832096 9784117 ~ 9788052 (+)
AMCG00020122 urm1 other downstream 1528513 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 1786481 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 1993571 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 2322003 11274024 ~ 11300032 (+)

Expression


Co-expression Network