AMCG00020091


Basic Information

Item Value
gene id AMCG00020091
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9386073 ~ 9392923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020091
TTCCCTCCTGGCCTATCATCAATAGTTTTCCTAGTGAAGGACGTTGGAGTCATTAACGCATCAGCCTTTGCCAGTGACAATCTAGGCTTTGTGTCTAGTGTGTCTATGGCTAATGCTGGCATTGCTCAAATTGAATCTGGGGCTTTTAAATCCTTCAATCAGCTGAAGAAACTCAGCTTGTACCGTAATAAACTCACCCAAATCAGCAGCGTCTGGCTGTCTAGGCCGGAGGCCCTGGACAACCTGACCATGTTTGAAAACAACATTCAGAAAATCGACGGAAAAACGTTGTCTCCCTTCTCAAATCTGCAAGTCCTTAACCTGGCAAGAAACCAAATTAATGCAATTGCACGGGACAGCTTTCAAGGACTGGACAAACTTGTCTTCCTGGACCTGTCAGGAAACAGACTGTCATATGTGGACAGGGATGCGTTTCTCCCTTTGCCATTCACCATGATCAGACTGGATGGCAATCCGTGGGATTGTTCATGTAAAGTAAAggattttgcacattttctcaGAGGCATGCCTGTGTGGAACATGTCGGAGCTGAACTGCTCGGCCCCCAGCACGGCCCCGAGCACGGCCCCCAGCACACCTCTGCCGCCCATAGATGCACTGGTTCATATAGGAGTACCTGCTGTCATCAGTTTCCTGGtcattCTCTGTATCCTGCTCTGCATCGTTCTTATGTACAAAAGGaagcaagagaaaaaacaagtgAATCCGGACAGAGAGGGACTAGAAGAGCGCAACTTTCCTAGGACAGAAGGAACGACAGCAAAGGCTGGACAGGAGGCTGCCACTGTCCTGCAAGGGAGGCTAGAGGAAGTGAGTTGTGGTACAGGTATTTCCAAGAACAGCGTCATGAAGGGCAGGGCCAAATCCGCCTCTGCTGTTCTCTCCATATGTGAGTTCACACAGCACAGTTACAGGGGGGAGGGGATGAAACTCGAAAACATGGCCCTCTCTCAACCTCAGGGCGATAACTTTACAGATCAGAGTCCcggaaagcaaataaaaatcattGAAAGTGGCATGATTAAAGAGGGGGCCGTTGTGTCAGTGTTTGGTTTCAAAGCCTTCCCACTCACCATTGCTCAGTACACTGGTGAACACTATGTAGACTATCAGACCAAAGAAACCAAAGGGAACTCAAGCGCTACGGTGGAAAAGGCATACATGTGTGAGTCTGCCAGTGACACGAGACAGATTTCTGAAGGAGCTGAGAACTTACCTTACCTTAGCATTGACACTAAACCAGCCAAACAGACCATGGAAACCACAGCTCAATGCCACCCAATTCCCAAAAAGAGCCAGGGACTCAGCCGCACTATCAAAAGGATGTCGACCTGGCCACCCACAAAGACTGAGTGGAAGCAACACCAAGTGGACACACATGATATCCAGAAAATAGCCCTGCAGCAGGGGGACTCCTCTCATGTGTGCCAGAAGGTGGATTTCTTATTCGGAGACAACTCTCAGAGCAAACTCCAAGTGCACCCTGAACCAGAGAACGTGGGTTTCTTCAGAGATAACTCTCAGAGCAAACTCAAAGGAAACCATGACTGTGAGTCTGCGCCACAGACTGATGGACTAGATGGGACCAGCGTGGATAATCCCGATGGGAAATGCTCGTCTATAAGTGAGGAAACGTCCAAAGGAGGGGAAAGGCCTCGGCGGTTTACGATTGAAGACACGGCCAAAGTGAATCATGGGAAAAAAAGAGCCGGCTCCCAAACTGCAGGCGAGAAGAAAAGAACCCGGCTTAAGCAGAGCGCCGCCCTCTACCCCCGGGccaaagaggaggagaagaaggatgACTTGCAGGCTGCTTGTGTGAGTAGCTACCCGGGGGATGCAAACCTGCTTCAAGAAGTCGTGGAGAATCAGGGCAGGTTCGCTGTATGCTTGTTTGCAGAGGTGCTGATGATTCTTGCCCTGCTGATGCCCCCCTGTAGCCTGGCACAGCTCTGTCCCACAAACTGCAAGTTCTGTTCGACTGGCCTGGCAGACTGCGAGGACATTTCCTCTCTGGTGCTTGGGATCCCCACCTCTATTGATAAGATCTTACTTCGTGGAGGACCTGTAACCCACTTCCCAGCAGGAGCGTTCAGGAACTTTTCCCACCTCAAAGTGTTATCCATCAACAACTTCCCCATTTCCACTATGATGAACTACTCGTTTGACCTGGGACAAAGCAACCACTTAAAAGAACTGGACCTCAGCAAGAACCGACTCACCAGCTGTGGAATAGAAGCTGCCAGCTTTGCAGATCTCATGAACCTTACATCTTTCACCTTGTCTAACAATGCGCTCAATACCTTGAGAAAACCCTGGTTTCAATCCATGGTGAGTCTTGAGAATCTTCAATTGGAAAACAATGGAATTACCTACCTGCAACCAAGACTTTTTGAAAACTTGCTTCATCTCAAGAAACTGAACTTGAGCTCCAATCTCATCAGCTACGTGTCCACTGATACATTCTTCGGTTTGAGAAATTTGATTGAACTGGACTTGGCTGATAATAAGGTGATGTCAATCAGTGATGACGCCTTCAGCCCCTTAAGAAACATTGAAGGCATTGCTTTGTTTCACAACAATTTAAAAGTACTGCCCACCCTGCCAGCGTCCACAAGTACATTGCAACTCCATAGCAACCCCTGGCTGTGCAGCTGTGTGCTGCACTGCAGACAAGGCAGTGTCACTGACCCACTGAGCGATAGGAAGGAGGGGGACGGCAGTGCATGTAGGGGACAGGCAGCAGTCCTGCAGGAGACATACGCTGCTGTGGCAGCTCTGACCCACATGCCTCCCTCTGCTGCACACGGCTACACACGGGACACTGGGCTCCAGGCACAAACTGAGCTTGACTGCCTTGGTGGAGAGAAGGAAGAGCAAAGCACAGGAAGGGAAGATCAGATTCGCTTATGTAGGACAGCTCCAGGCTTTCTTACAGCGGTTGATGAACTCCATCAAGTGACAAGTGGAGAAGAGATGTCCAATGCTGAAACATCTGTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020091 True 3024 mRNA 0.49 7 9386073 9392923

Neighbor

gene id symbol gene type direction distance location
AMCG00020090 NA coding upstream 1697 9349079 ~ 9384376 (+)
AMCG00020085 ubac1 coding upstream 47494 9326919 ~ 9338579 (+)
AMCG00020086 NA coding upstream 84877 9271524 ~ 9301196 (+)
AMCG00020075 pmpca,LOC107731046,LOC107672556 coding upstream 228359 9144551 ~ 9157714 (+)
AMCG00020074 NA coding upstream 248323 9130682 ~ 9137750 (+)
AMCG00020089 NA coding downstream 133428 9526351 ~ 9527538 (+)
AMCG00020092 NA coding downstream 143191 9536114 ~ 9542291 (+)
AMCG00020095 NA coding downstream 232166 9625089 ~ 9625634 (+)
AMCG00020099 LOC105014073 coding downstream 298315 9691238 ~ 9732050 (+)
AMCG00020104 NA coding downstream 348834 9741757 ~ 9779949 (+)
G60836 NA non-coding upstream 136259 9249600 ~ 9249814 (+)
G60753 NA non-coding upstream 499617 8886187 ~ 8886456 (+)
G60729 NA non-coding upstream 576204 8807002 ~ 8809869 (+)
G60719 NA non-coding upstream 584495 8801169 ~ 8801578 (+)
G60633 NA non-coding upstream 1329968 8054468 ~ 8056105 (+)
G60886 NA non-coding downstream 14734 9407657 ~ 9408017 (+)
G60888 NA non-coding downstream 30414 9423337 ~ 9423559 (+)
G61064 LOC103376870 non-coding downstream 884543 10277466 ~ 10346391 (+)
G61095 NA non-coding downstream 1113476 10506399 ~ 10507213 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 1388843 10781766 ~ 10783898 (+)
AMCG00020053 NA other upstream 1334926 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 1501525 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 3198184 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 3271877 6106994 ~ 6114196 (+)
G60132 NA other upstream 4026708 5358464 ~ 5359365 (+)
AMCG00020105 rpl28,rl28 other downstream 391194 9784117 ~ 9788052 (+)
AMCG00020122 urm1 other downstream 1087611 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 1345579 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 1552669 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 1881101 11274024 ~ 11300032 (+)

Expression


Co-expression Network