AMCG00020101


Basic Information

Item Value
gene id AMCG00020101
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9809990 ~ 9815939 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020101
ATGTCAGTGTTCTTGTCTCGTCCCGTGGACAGCGTGTCCCTGCTGGGCAGACCGCTCGTGGTGCCCTGCTCTGTGTATGACACTCAGACCCACCAGCAGCTGCCTGTGCACTGGCTGAAGGACACAGGAGATCTGGACACCTGGGTTCACCAGCTGGCCAATGGGTCACTGTTCTTCCCCAGCCTGCGGGAGGAAGACCTCGGCACCTACACCTGCCAGGCCAGCGATGGGCTGTCTCTTATCAATGCTACTGTCAGCATTTCCAAGGCCTATCTGGATGGTATGTTCCACAGTCCCATGTCTCAGACAGTGAGGGCAGGAGACAGCGTGTTCTTCCAGTGTGTTTCTGGAGACAGTCTACCTCCCGCACAGATCAGCTGGCAGAAGGAGGGGCAGCTCTTTACCAAGGGAGGGCAGATTCAGGGTGAATATGGAGGaggaaattataaaaaaatatctggcACGTTACATATTCCCGCCGTGTCCAAGGAAGACGAAggaaaatatgtgtgtgtgacatatAACAGTGTACTGGGAGTACATCTGTACAGTGAGCCAGCATCTCTCACAGTGGAAGTGCTGCCGTCCAGACTGGTGATATCTCAGGGTCCCGAGAACCTCACTGTCCCGTTGGAAACAGAGGCAGTTCTGCACTGTTCTGTCCAGGGGTTCCCTTTCCCCGTGGTGCAGTGGTATAAAAACAACCAGCCCCTGGAGAACAGGACACATCTGAGATTGGAGGACCAAGGGCAGCTACTCGTCTTCAAAAACGTGTCTGTGGAAGATGAGGGCTCCTACTATTGCGAAGCCCAGAACGGAGTGGACACAGTGACATCCCAAGCTGCATACCTGCTTCCTGCTGTCATGGGCTGGGGCTTTGGTCAGCAACCCACCAATGTGACAGCGAGAAGGGGAAGCTCCATTACTCTGACCTGCAGGCCTCCGCACAGTAGGCCTCCTGCCAGCATCACCTGGTTCAAGAACAATAGGGTGCTTAACAAGATGCCACACTTTATGTTCCAGGAGAGTGGAGACTTGTTTTTTCAGAGAGTCCAGGAAACAGACAGAGGAATCTACTTTTGCAGAGCATCCAATCCCTATGTGTTTAGGGCTGTGTCTTCTGTAAAAGTCCATCTAAATGTGTTAGTCCCCCCAAACATCACCATATCACCTGAAACGATGACAGCCACACTGGGGTCCAGAGTGTTTTTCCAGTGTCAGGCCTCTGGCAGTCCCTCACCCTCCATCGTTTGGTACAAACAAGGCCAAACCATCAAGACAGGGGGGAAGATAACAGTCGGGTCTCAAAACATCACTCTGTACATCTCTGCGGTGCGGGCCTACGATGAGGGCACATACACCTGTGAGGCCACCAATGCCCTGGGGCAATCCCGCTTGTCAGCAACGCTGCGAGTGGCAGGTGACAGTAATCTCTTCCCGTGTTCcttcacagaataaaaaaaacgaGTGTGCAGTTTTTACTTTGAGAGCTGTTTTCTGTGAACACAAAGTGCTATTCCTTATTCTAGCTGCAAGGGGTCAATAGCCACAGTAATACTGCAGCGTGACTGTCCTGGTTACTGTTCCAGAGAGGTTGAGACAGGTAGTTGTCAGATAGTGCCTCTGCTATATGTCCAAGGCATTTTGGCAAGATCTCTTTCGTTGGCACAATGTGCGTTATTTAAGGGGCACTTAAAAAATTCAGGCAGGATTTAAATTAAGTGAAACATCTTTATTGTAGGATCCAAGCCCTCCaagtattatgtaaaatgttatgaatGTCAGGATGTAGAAACAAAAGAGGAACAAGACCCGAACGCTTTTGTGTACCACACTGCTCTCTCACATTATACTTAACATCTCCTGAAGTACAATTTAGGGGTTTCCATGACATTTTAGTGGAAGAACAACTGTAATCAGAAAAGGACATaacc

Function

GO:

id name namespace
GO:0051963 regulation of synapse assembly biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007416 synapse assembly biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020101 True 1934 mRNA 0.50 9 9809990 9815939

Neighbor

gene id symbol gene type direction distance location
AMCG00020104 NA coding upstream 30041 9741757 ~ 9779949 (+)
AMCG00020099 LOC105014073 coding upstream 77940 9691238 ~ 9732050 (+)
AMCG00020095 NA coding upstream 184356 9625089 ~ 9625634 (+)
AMCG00020092 NA coding upstream 267699 9536114 ~ 9542291 (+)
AMCG00020089 NA coding upstream 282452 9526351 ~ 9527538 (+)
AMCG00020102 rbm18,LOC107744142 coding downstream 76205 9892144 ~ 9904648 (+)
AMCG00020103 lhx6,LOC106561716,LOC107685129 coding downstream 94296 9910235 ~ 9925271 (+)
AMCG00020109 ndufa8,LOC106561701 coding downstream 127554 9943493 ~ 9947094 (+)
AMCG00020108 NA coding downstream 175691 9991630 ~ 10002494 (+)
AMCG00020110 zbtb6 coding downstream 213869 10029808 ~ 10035881 (+)
G60888 NA non-coding upstream 386431 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 401973 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 560176 9249600 ~ 9249814 (+)
G60753 NA non-coding upstream 923534 8886187 ~ 8886456 (+)
G60729 NA non-coding upstream 1000121 8807002 ~ 8809869 (+)
G61064 LOC103376870 non-coding downstream 461527 10277466 ~ 10346391 (+)
G61095 NA non-coding downstream 690460 10506399 ~ 10507213 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 965827 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 1192477 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 1677687 11493626 ~ 11521381 (+)
AMCG00020105 rpl28,rl28 other upstream 21938 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 1758843 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 1925442 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 3622101 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 3695794 6106994 ~ 6114196 (+)
AMCG00020122 urm1 other downstream 664595 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 922563 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 1129653 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 1458085 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 2593023 12408962 ~ 12414951 (+)

Expression


Co-expression Network