AMCG00020109 (ndufa8,LOC106561701)


Basic Information

Item Value
gene id AMCG00020109
gene name ndufa8,LOC106561701
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9943493 ~ 9947094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020109
GCTAAATGCTTCGCGCATGCGCTGTAGTTTGACCTTCTCTGTGCGGCCTGCTTTGTCGCTCTCATCCTCGTCCACCTCTGAGACGGGGACCTTGAGTACATTTCAAGTTCTTCGCCgcttaaatgttaaaagtcggggatttgtgttaaataaatcgATTAAAATACGACCAAATACACAATGCCGACTGTTGTGGAAATACCGACTTTAGAGGAACTGAACGTACAGGAGGTGAACGTCTCTTCAGCCGTGTTGAAGGCAGCCGCTCACCACTATGGCTCTCAGTGTGACAAAGCCAACAAAGAGTTTATGCTCTGCCGTTGGGAAGAAAAGGACCCCAGGAAGTGCTTGAATGAGGGAAGGAAGGTCAACGAGTGTGCGTTGCAGTTCTTTAGGCAGATTAAGGGTAATTGCGCCGAGTCCTTCACAGAATACTGGACCTGCTTGGATTACTCCAATCTCACTGAGCTGCGCCGTTGTCGCAAGCAACAGCATGAGTTTGATAGCTGTGTTCTGGAGAAGCTGGGGTGGGAGAGACCCAATCTTGGAGATTTGTCTAAGGTCACTAAGGTGCAGACTGACCGACCTTTGCCAGATAATGTGTACCATTCGAGACCAAGACCAGAGCCCAACCCAGTCATCGAAGGAGAACTCAAGCCATCCCGATATGGTAGCAGGCTTTTTTTCTGGAACTGGTGAAGTCACCCTTCATTAAACCTCTGTAAGCACTCACTGTTGAGCCACTGCGGGATGTGAACGTCTCAAAGCCGCTTGTATTGTACCATACAATTCTTCtgtatgtaaagaaaaaaggattctcttaaaaataaaaaataataatttaaactggcTTAgaaatttgatattttgtaattgaagaGTATGCTTGTATATTGGAAATTGAATGTGGT

Function

symbol description
ndufa8 Predicted to act upstream of or within mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in mitochondrial inner membrane; mitochondrial intermembrane space; and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency. Orthologous to human NDUFA8 (NADH:ubiquinone oxidoreductase subunit A8).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

GO: NA

KEGG:

id description
K03952 NDUFA8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020109 True 911 mRNA 0.45 4 9943493 9947094

Neighbor

gene id symbol gene type direction distance location
AMCG00020103 lhx6,LOC106561716,LOC107685129 coding upstream 18222 9910235 ~ 9925271 (+)
AMCG00020102 rbm18,LOC107744142 coding upstream 38845 9892144 ~ 9904648 (+)
AMCG00020101 NA coding upstream 127554 9809990 ~ 9815939 (+)
AMCG00020104 NA coding upstream 163544 9741757 ~ 9779949 (+)
AMCG00020099 LOC105014073 coding upstream 211443 9691238 ~ 9732050 (+)
AMCG00020108 NA coding downstream 44536 9991630 ~ 10002494 (+)
AMCG00020110 zbtb6 coding downstream 82714 10029808 ~ 10035881 (+)
AMCG00020111 NA coding downstream 91666 10038760 ~ 10040058 (+)
AMCG00020113 NA coding downstream 117596 10064690 ~ 10086510 (+)
AMCG00020115 rabgap1,LOC107686418,LOC107744072,LOC107713323 coding downstream 160271 10107365 ~ 10142444 (+)
G60888 NA non-coding upstream 519934 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 535476 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 693679 9249600 ~ 9249814 (+)
G60753 NA non-coding upstream 1057037 8886187 ~ 8886456 (+)
G60729 NA non-coding upstream 1133624 8807002 ~ 8809869 (+)
G61064 LOC103376870 non-coding downstream 330372 10277466 ~ 10346391 (+)
G61095 NA non-coding downstream 559305 10506399 ~ 10507213 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 834672 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 1061322 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 1546532 11493626 ~ 11521381 (+)
AMCG00020105 rpl28,rl28 other upstream 155441 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 1892346 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 2058945 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 3755604 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 3829297 6106994 ~ 6114196 (+)
AMCG00020122 urm1 other downstream 533440 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 791408 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 998498 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 1326930 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 2461868 12408962 ~ 12414951 (+)

Expression


Co-expression Network