AMCG00020120


Basic Information

Item Value
gene id AMCG00020120
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10532713 ~ 10538018 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020120
GTACGTGACGTCAGCCTTAGTAACGCGGCAGAAACAAAACTCATTGTTGGAGCTTAAAAagtttgaaatacttttttattgGAGGCCAACGCAACCAAGATGGCTCCCAAGAAGAAAGCAATCAAAAGCGGAGATAAAGCGAGTAAATCGAGTAAGAAGGAGGAAGACAAGAAGCTGGAGGAGCCGCTGTCGGAGCTCAGTAAGGAAATGTACCGGCTGCAGATAAAGGACCTGGAAGAACGACTGGAGAGGTATCAGCACAAATGTGACGAGCTGGAGGTGCGTGAAAAGGAGTTCTCTTCAAAGTTAAAGGACCTGGACAAGGACAGGAAGGACATTGTGTCCTTCCTGAAGCGCACCCTGGCCCAGACCACTGACAAACTGGCGAACGTCAAGGACCAGCTCCTGGGGGTCGAGCAGGCCAAGGAGATGGAGAAGGACTCCTATGAAACGCAACTGGCTCAGCTGCGCCACGAGTTCCAGGGGACCAAGGACCAACTCGTGTCTGAGAACATGGTGCTGGCTGGGAAGCTGGCGTCTCTGGAGGAGTTTCAGGTGCAGAAAGAGAACCTGATGGCGCAGCTGGCCAGCATGGAGGAGCAACTGGAGAGACAGAAGCAAGAGCACCAGACTGTCGTCTACAACCTGGAGATGAAGGCAGTACTGGATAATGACAGGCTGAAGAAGGAGATGCAAGTGAGGGTGACGGACGTGGCGGCAGAGTTCCGGCAGGTGTCGGATAAGCAGATGGCCGAGACGACCAAGAGGATGATCCGCGAAAACATGTCGTTGACCGCGCAGCTGGGAAAACTGTCGGACAAGAGCCTGGAGCTGCTGGGGGAGAATGAGGCCCTGAGGGAGCAGGAAGTGCACAACCAACAGGAGCTGTGGGTGCTGGAGCACGGGCAGAAGGAGCTGGCCAGGAAGAACATCGGCACTAAGAAGGTGGTGCTTATGCTGACAGAGAAGTGCAAGCAGCTGCAGGCTGAACTGGAGGAATGTAATCAGAGCCAAAGCGAACATCTCCAGCTGCAGGCAAACCACGCCGTCCTCCAGCACGACTTGGAGACGCTCAGACAGGAGCTGGGTGCTGTGAAGGGGgactgggagagggagagggccgAGGCAGAGCGGCTGAGCAGAGAGCTGGCAGGCGAGAGGGGAATCAGGGCCCAGCTGGAGAGCGTTCTCCTGGAGGCGGCCCGCACTCTTAAAGATGCTCTGAcgAGGACCTTCCCTGACTTACCGCTACAGGAGATGCCCGGTAAGCAGAGCAACTCGGAGGCGGCAGTTCTTGCGCGTCGGAGCCAGATGATGCAGAAGCTCTTAGCCCTGCTCAACACTGCTGCCCTGCTGGGCATAGGGCCTACCCTGCAAGAGTTCCTGAAAGACGCAGATGATTCACATGAGCACAGCACAGGGTCTGGCCCTGAGAGACCTGGAATCCTCTCTCCATTACTGAAGGGTCCCAAGCTCCCCCCCCACTACAGGCTCGGAGACCTGGGACTGGTCCCTCGACCTGCACAAACCCTGGGCCCTGCCCTGTCCAAAGTGGGACCTCTATCCAAGACCACCCAGCTCAGCCTCCACAAACCAGCCCCAGTCCAGGTGGCTCCAGACTCCAAGTGCAGGAAAGCGGGCAATCAGGCTAGTTGAGTTAGTGCCTTTGATATTAATGAAGTAACAGATTGTTCATTTATGAAGCTGATCAAATAACAGCTGTTTGGGacagttaaatatatacttgTTGAAGTAATAAAGGGCACAAGGCCAAGTTTGAGCTCTTATTTCTTGTACATTCACGTGGGAATAAATCATGTTAATGCTGACTTCAGACAGGGCTTGGCAGGATGGCCACGATTCTCTGGCTCCACCTCTTTGGAACACTGCAGACTACTGTTAATTATCTCCGATACGCTTTCCTGTGCAATGTATCTGTCATTTATAACTCATGCAGAATacacatattttttgttgtttacataaatggaaaataaatgacatgacACAGAAGGAGTGAAGGCTTGCCAGTTCGACTTTTCTCTTCGTTGCTTTTCCATTTAGCTGGG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020120 True 2069 mRNA 0.53 8 10532713 10538018

Neighbor

gene id symbol gene type direction distance location
AMCG00020121 cercam coding upstream 1450 10520781 ~ 10531263 (+)
AMCG00020118 NA coding upstream 55054 10469386 ~ 10477659 (+)
AMCG00020119 NA coding upstream 64861 10454027 ~ 10467852 (+)
AMCG00020116 rabgap1 coding upstream 328158 10170750 ~ 10204555 (+)
AMCG00020114 NA coding upstream 379438 10152226 ~ 10153275 (+)
AMCG00020131 NA coding downstream 3759 10541777 ~ 10544364 (+)
AMCG00020128 sardh coding downstream 21652 10559670 ~ 10596696 (+)
AMCG00020127 sardh,LOC107713264 coding downstream 69785 10607803 ~ 10628137 (+)
AMCG00020130 NA coding downstream 158520 10696538 ~ 10697008 (+)
AMCG00020126 LOC107597661 coding downstream 218002 10756020 ~ 10771515 (+)
G61095 NA non-coding upstream 25500 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 186322 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1109154 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 1124696 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 1282899 9249600 ~ 9249814 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 243748 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 470398 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 955608 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 1463682 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 1470774 12008792 ~ 12009100 (+)
AMCG00020122 urm1 other upstream 33207 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 744661 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 2481566 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 2648165 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 4344824 6182699 ~ 6187889 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 200484 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 407574 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 736006 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1870944 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1981746 12519764 ~ 12542261 (+)

Expression


Co-expression Network