AMCG00020121 (cercam)


Basic Information

Item Value
gene id AMCG00020121
gene name cercam
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10520781 ~ 10531263 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020121
ATGGACGGGCGCGGATGgcggcggctgctgctgctgctggcggCGCTGGTCGGCGCGGCGCGAGGCTACTTTTCGGAGGAGAAGCCGCGCGAGGAGTCCGGCACGCGGCCGCCCGCCGTGGTGCTCGCGGTCATCGCGCGCAACGCCGCGCACTCGCTGCCGCACTACCTGGGCGCCGTGGAGCGGCTGGACTACCCCAAACAGCGCATCTCCGTGTGGGTGGCGACAGATCACAACCTTGACAACACCACTGCAATCCTTCGAGAATGGCTGACTGTTATGCAGAAGTATTATCACAAAGTGGAGTGGAGACCTATGGAGATGCCCACGTCATATCCTGGGGAACTGGGACCCAAGCACTGGCCGAATGGGAGATTCGAGTACGTCATGAAACTGAAACAGGCTGCGCTCAACTTCGCCAAGAGACAGTGGGCTGACTACATCCTGTATGCTGACACAGATAACATCCTGACCAACCCCAAGACTCTCAGACTTCTTATTGCTGAGGACAAGTCTGTCGTTGCTCCCATGTTGGACTCCCAGAGTGCTTATTCTAACTTCTGGTGTGGCATCACCCCACAGGGGTACTATCGACGTACAGCGGAGTACTTCCCCACTAAACATCGCCATCGCCGCGGCTGCTTCCCTGTTCCCATGGTGCATTCCACCTTCCTCTTGGATCTGCGCAGGGAAGGTGTCAAGAAGTTGGCCTTCCACCCCCCCCATCCTGACTACTCCTGGCCCTTTGACGACATTATCGTCTTTGCGTTCTCCTGCCGCGTCTCAGAAGTGCAGATGTACCTCTGTAACAAGGTGCGCTACGGATACCTGAACGTCCCTGCAAAGCCACACCAAACAAATGACGACGACCGAATCAACTTCATCCACCTTCAGCTGGAGTCTATGATTGATGGGCCACCTATGTACCCCTCACAACATGTATTCCTGCCCCCCAAAACTATGGACAGGATGGGTTTCGATGAGGTGTATCTGATCAATCTGCGCCGCAGGCCAGACCGCAGAGAGAGGATGCTGTGGTCCCTGTACGAACAGGAAATCGACACCAAAGTGGTGGACGCTGTGGACGGAAGTGCCCTCAACAGCAGTGACATCAAGATCCTGGGCGTAGACCTCCTGCCTGGCTACTATGACCCTTTCTCTGGACGCACCCTCACCAAGGGTGAAGTGGGCTGCTTCCTCAGCCACTACTACATCTGGAAAGAGATTGTGGACCAGCAACTGGACAAGGCAGTTGTGTTTGAGGATGATGTTCGTTTCCAAGGCAACTTCAAACGGAGGCTCATGCGTATGATGGAGGAGATTGAGAAGGTGGAGCTGGACTGGGACCTCATATACCTGGGCCGCAAGCAGGTGAACCCGTCTGACGAGAAGCCCGTGGAGAACGTGAGGAACCTGGTGATCGCGGACTTCTCCTACTGGACTCTGTCCTACGTCATCTCGCTGCAGGGCGCCCAGAAGCTGCTCAACGCGGAGCCCCTCTCCAAGATGCTGCCCGTGGATGAGTTCCTGCCCATCATGTACGACAAACACCCCAATGAGAAGTACAAGGAGCATTTTCCCAACCGCAACCTTCAAGTGTATTCCACACGCCCTCTGCTGGTGTTTCCTTGTCACTACGCTGGGGACCCTCAGTGGGTGAGCGACACGGAGACCTCCACACTGTGGGACGACGATTCGGTGCGGACAGATTGGCGCGGGTCCCACAAGACTCTGAAGGGTGCTCCTCCCAATGCCGGCCTACAGAACGCCTTCCGGGACGAGCTCTAGCTGCAGGCCCCTGCATTGAAAGACCTTTTTACTTGAACTGGGCAGGTGGGAGGCAATACATTCCAGAGGTTGGAACTGAGATCTAGCTGGCATATGAACTTTTAACCGACACCATCAGAGGAGTAACTCGGCGAGACAATCAGGAGAAGATGGAGACAGACGGCGGAGGACTGCTCACATAAGATTGCACCTGGAACCACGGCTCAGCTGTCCCAATTGATTTTTGTGTGCCAGTGGAGGccgatgtgtgtgtgtatgtgtatgcatgagtgtgtgtgctctcaaataatatttaaatagaactTTGAATTTATAATACCAGCTCATATACCTGATTTAGAATTCAAAATGGTAGTATGTTCATTCAGGAACACAACATCTTGGGGGGCGGGGTTAAAATTCAGCACAACTACAAAGTTTGGAGTATTGACATTTCAGCACAGAGAGAAGCTCTCTTCCACACAAGAGACCAAAGCCTGATTTATCTGGAGTCTAAAGAGTTTACATTGACAAACACATTGTGGCAGAGCAGTGCAACCACTTTGTTGTGTGTTCTTTTGACAGGAAGGGAACTATAGTTTCCTTTGCTTTCTATTTTGAATATCTTACCACAAcctacaaatacacacacagtattattgacaaaccaaccaaaaatcCTGCACATGTATGGTggatatgttaaaaataataacgtGCCCTCTAATATAATTAATCTGATCCATCTCCTGTTTCTGGACTTAATTACTTTCTGGACATACTTATTTCTACTGCTGTTGCAAAACATATTGTCATCCTGCTCTCCCTTGGCAGTAGACTGTTTTGTCATTGCATAACGTGATGAAACAAGTttcccaccaccaccaaaatGAACTGTACGTACAGCCCATATAGTAGTACTGGTGTTGCCCCTGTGTTTGTGAGTCTTTTGTATTTGTGGAAATGCATGTCAAGTAAAACACCTGTAAAAGTGTCAGGacagtgtaaaaaataaataaagaccgtgttttttactttgttaCA

Function

symbol description
cercam Is expressed in several structures, including central nervous system; neural tube; notochord; otic vesicle; and pectoral fin musculature. Orthologous to human CERCAM (cerebral endothelial cell adhesion molecule).

NR:

description
probable inactive glycosyltransferase 25 family member 3

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020121 True 2811 mRNA 0.51 13 10520781 10531263

Neighbor

gene id symbol gene type direction distance location
AMCG00020118 NA coding upstream 43122 10469386 ~ 10477659 (+)
AMCG00020119 NA coding upstream 52929 10454027 ~ 10467852 (+)
AMCG00020116 rabgap1 coding upstream 316226 10170750 ~ 10204555 (+)
AMCG00020114 NA coding upstream 367506 10152226 ~ 10153275 (+)
AMCG00020115 rabgap1,LOC107686418,LOC107744072,LOC107713323 coding upstream 378337 10107365 ~ 10142444 (+)
AMCG00020120 NA coding downstream 1450 10532713 ~ 10538018 (+)
AMCG00020131 NA coding downstream 10514 10541777 ~ 10544364 (+)
AMCG00020128 sardh coding downstream 28407 10559670 ~ 10596696 (+)
AMCG00020127 sardh,LOC107713264 coding downstream 76540 10607803 ~ 10628137 (+)
AMCG00020130 NA coding downstream 165275 10696538 ~ 10697008 (+)
G61095 NA non-coding upstream 13568 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 174390 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1097222 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 1112764 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 1270967 9249600 ~ 9249814 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 250503 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 477153 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 962363 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 1470437 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 1477529 12008792 ~ 12009100 (+)
AMCG00020122 urm1 other upstream 21275 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 732729 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 2469634 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 2636233 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 4332892 6182699 ~ 6187889 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 207239 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 414329 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 742761 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1877699 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1988501 12519764 ~ 12542261 (+)

Expression


Co-expression Network