Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020127 |
| gene name | sardh,LOC107713264 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 10607803 ~ 10628137 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| sardh | Predicted to enable sarcosine dehydrogenase activity. Predicted to be involved in sarcosine catabolic process. Predicted to be active in mitochondrial matrix. Is expressed in alar plate midbrain region; digestive system; myotome; nervous system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sarcosinemia. Orthologous to human SARDH (sarcosine dehydrogenase). |
| description |
|---|
| sarcosine dehydrogenase, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0006546 | glycine catabolic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0004047 | aminomethyltransferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020127 | True | 882 | mRNA | 0.54 | 6 | 10607803 | 10628137 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020128 | sardh | coding | upstream | 11107 | 10559670 ~ 10596696 (+) |
| AMCG00020131 | NA | coding | upstream | 63439 | 10541777 ~ 10544364 (+) |
| AMCG00020120 | NA | coding | upstream | 69785 | 10532713 ~ 10538018 (+) |
| AMCG00020121 | cercam | coding | upstream | 76540 | 10520781 ~ 10531263 (+) |
| AMCG00020118 | NA | coding | upstream | 130144 | 10469386 ~ 10477659 (+) |
| AMCG00020130 | NA | coding | downstream | 68401 | 10696538 ~ 10697008 (+) |
| AMCG00020126 | LOC107597661 | coding | downstream | 127883 | 10756020 ~ 10771515 (+) |
| AMCG00020138 | NA | coding | downstream | 376796 | 11004933 ~ 11008268 (+) |
| AMCG00020137 | gapvd1 | coding | downstream | 399524 | 11027661 ~ 11063288 (+) |
| AMCG00020142 | pbx3b,LOC107669256,LOC107550583,LOC107555108 | coding | downstream | 575712 | 11203849 ~ 11205492 (+) |
| G61095 | NA | non-coding | upstream | 100590 | 10506399 ~ 10507213 (+) |
| G61064 | LOC103376870 | non-coding | upstream | 261412 | 10277466 ~ 10346391 (+) |
| G60888 | NA | non-coding | upstream | 1184244 | 9423337 ~ 9423559 (+) |
| G60886 | NA | non-coding | upstream | 1199786 | 9407657 ~ 9408017 (+) |
| G60836 | NA | non-coding | upstream | 1357989 | 9249600 ~ 9249814 (+) |
| G61153 | LOC103469607,LOC104930867,LOC103356464 | non-coding | downstream | 153629 | 10781766 ~ 10783898 (+) |
| G61205 | NA | non-coding | downstream | 380279 | 11008416 ~ 11011745 (+) |
| G61249 | mvb12b,LOC104934585,LOC105922272,LOC103362447 | non-coding | downstream | 865489 | 11493626 ~ 11521381 (+) |
| G61329 | NA | non-coding | downstream | 1373563 | 12001700 ~ 12003127 (+) |
| G61331 | NA | non-coding | downstream | 1380655 | 12008792 ~ 12009100 (+) |
| AMCG00020122 | urm1 | other | upstream | 108297 | 10480534 ~ 10499506 (+) |
| AMCG00020105 | rpl28,rl28 | other | upstream | 819751 | 9784117 ~ 9788052 (+) |
| AMCG00020053 | NA | other | upstream | 2556656 | 8044275 ~ 8051147 (+) |
| AMCG00020052 | NA | other | upstream | 2723255 | 7866600 ~ 7884548 (+) |
| AMCG00020000 | NA | other | upstream | 4419914 | 6182699 ~ 6187889 (+) |
| AMCG00020129 | tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 | other | downstream | 110365 | 10738502 ~ 10755375 (+) |
| AMCG00020134 | rabl6 | other | downstream | 317455 | 10945592 ~ 10969598 (+) |
| AMCG00020143 | pbx3,LOC107669256,LOC108434408 | other | downstream | 645887 | 11274024 ~ 11300032 (+) |
| AMCG00020171 | rpl12 | other | downstream | 1780825 | 12408962 ~ 12414951 (+) |
| AMCG00020177 | NA | other | downstream | 1891627 | 12519764 ~ 12542261 (+) |
