AMCG00020128 (sardh)


Basic Information

Item Value
gene id AMCG00020128
gene name sardh
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10559670 ~ 10596696 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020128
ATGGCCTTTCTGGGCACTGTAGTGAGGAGGGCTGCTTCTTGTAGGCCCTTGCCCCCATCTCTCTGCCCCGCGACCTCTCGCTGCTACAGCAGCCCAGGGAAGCAGACCACAGAGAAGAACGTTCCCTACAAGAAAACCCTGAAACAGGGCGGGGGGGCGGTCAGCGGGCCCACCAAGCCCCTGCCAAAGTCTGCTGACGCTGTTGTGATCGGAGGAGGGAGCCTGGGATGCCAGACTGTATACCATCTTGCCAAAATGGGCATGACTAACGTGGTGCTTCTGGAGCGCGACCACCTCACAGCAGGAACCACTTGGCACACAGCGGGCTTGTTGTGGCAGCTCAGGCCCAGTGACGTGGAGGTGGAGCTCCTGGCCCACACGAGACAGGTGGTGAGCTGTGACCTGGAGCAGGAGACCGGGCTGCACACTGGCTGGATCCAGAACGGAGGGCTCTTCATTGCCTCCAACAAGCAGCGTCTGGATGAGTACAAGCGTCTCATGACGCTGGGGAAAGTGTATGGAATCGAATCACATGTCCTGTCCCCTGCTGAGACCAAGGACCTTTACCCTCTCATGAATGTGGACGATCTGTACGGCACACTGTATGTTCCCAAGGATGGCACGATGGACCCGGCAGGCACTTGTACCACTCTGTGCAGGGCAGCTACAGCAAGGGGCGCTACAGTTATAGAAAACTGCCCAGTGACAGGAATCCAGGTTCAGACCAATGATCTTGGTGTGAAAAAGGTGAAAGCTGTTGAAACGGAATATGGGACCATCCTCACCCCCTGTGTAGTCAATTGTGCAGGTGTCTGGGCCCAGAAACTGGGCAGAATGGCAGGAGTAAACGTGCCCCTCATTGCCATGCACCATGCCTACGTGGTGACCGAGAGGATCGAAGGAATCCAGAATATGCCCAATGTCCGGGACCACGATGCATCTGTGTACCTCCGTCTCCAAGGAGATGCCCTCTCTGTTGGCGGTTATGAGCAGAATCCCATTTTCTGGGAAGAGGTTTCTGACAAGTTTGCCTTCAGTCTGTTTGATTTGAACTGGGACGTCTTCATGCAGAACATTGAGGGAGCTATCAACCGGATTCCCGCACTGGAGAGAACCGGGATCAAATCTACTGTCTGTGGACCAGAATCCTTCACTGCTGATCACAAGCCTTTGATGGGTGAGGCTCCCGAAGTCAGAGGATTCTTCTTAGGCTGTGGCTTCAACAGTGCAGGTATGATGCTTGGAGGAGGCTGTGGGAAGGAACTTGCTCACTGGATCATCCATGGGCGACCAGAGAAAGACATGTATGGATATGACATCAGGAGGTTCCATCACTCGCTCACAGATAATAACCGATGGATCCGGGAGCGCAGTCATGAGTCCTACGCCAAGAACTATTCTGTGGTGTTCCCTTTCGATGAGCCCCTGGCAGGCAGGAACATGAGGAAAGACCCTTTTTACCAGGAGCTGGTGGCTCAGGGCTGTGTGTTCCAGGAGAGGCATGGCTGGGAGCGTCCGGGCTGGTTTAACCAAGAAGGCCCGGCACCTGTTTTGGACTATGATTATTATGGGGCCTATGATGCATCCAAAAATCATAACTACAAGTATAATGAGCTGCTGACAAGAGAGTATACTTTTGACTTCCCACCCCATCATGATTTGATCAGAGATGAGTGTCTGACGTGCAGGAACGCAGTGGCTGTTTTTGACATGTCTTACTTTGGAAAGTTCTACCTGGTGGGCCCGGATGCCAAGAAGGCCGCGGACTGGCTATTTTCAGCGGATGTTAATAAGCCCATGGGCTCCACCATCTACACCTGTATGCTGAATAAGAGGGGTGGCACTGAGAGTGATCTTACGGTCAGCCGCATTGAACCAGGCCCGTCCGGCTCTCCTCTTGCTCCTGCTTTCCAAGGTCAGTTACTTGGCAACATGGTCCTGCCACTGCTGGGGAGAGAATTGCTCAAATGA

Function

symbol description
sardh Predicted to enable sarcosine dehydrogenase activity. Predicted to be involved in sarcosine catabolic process. Predicted to be active in mitochondrial matrix. Is expressed in alar plate midbrain region; digestive system; myotome; nervous system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sarcosinemia. Orthologous to human SARDH (sarcosine dehydrogenase).

NR:

description
sarcosine dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006546 glycine catabolic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004047 aminomethyltransferase activity molecular_function

KEGG:

id description
K00314 SARDH; sarcosine dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020128 True 1971 mRNA 0.54 14 10559670 10596696

Neighbor

gene id symbol gene type direction distance location
AMCG00020131 NA coding upstream 15306 10541777 ~ 10544364 (+)
AMCG00020120 NA coding upstream 21652 10532713 ~ 10538018 (+)
AMCG00020121 cercam coding upstream 28407 10520781 ~ 10531263 (+)
AMCG00020118 NA coding upstream 82011 10469386 ~ 10477659 (+)
AMCG00020119 NA coding upstream 91818 10454027 ~ 10467852 (+)
AMCG00020127 sardh,LOC107713264 coding downstream 11107 10607803 ~ 10628137 (+)
AMCG00020130 NA coding downstream 99842 10696538 ~ 10697008 (+)
AMCG00020126 LOC107597661 coding downstream 159324 10756020 ~ 10771515 (+)
AMCG00020138 NA coding downstream 408237 11004933 ~ 11008268 (+)
AMCG00020137 gapvd1 coding downstream 430965 11027661 ~ 11063288 (+)
G61095 NA non-coding upstream 52457 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 213279 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1136111 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 1151653 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 1309856 9249600 ~ 9249814 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 185070 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 411720 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 896930 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 1405004 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 1412096 12008792 ~ 12009100 (+)
AMCG00020122 urm1 other upstream 60164 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 771618 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 2508523 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 2675122 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 4371781 6182699 ~ 6187889 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 141806 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 348896 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 677328 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1812266 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1923068 12519764 ~ 12542261 (+)

Expression


Co-expression Network