AMCG00020129 (tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143)


Basic Information

Item Value
gene id AMCG00020129
gene name tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10738502 ~ 10755375 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020129
ATGGGTTCGATTATTGCCAAGATGTTACTGCCCACCGTCAGCAGCCTGGCATTCATGCCCGCCATCAGCGTGGCAGCCAAGCGTGGATTCCACATGGAAGCTATGGTTTATTTCTTTACCATGTTCTTTGTCGCGATTTACCATGCGTGCGATGGCCCTGGATTGTCAATACTGTGCTTTATGAAATATGAGATACTGGAGTATTTCAGTGTTTACGGAACAGCCATCTCAATGTGGGTTACTCTGATAGCTCTGGGAGACTTTGATGAACCCAAAAGATCCACTCTGACCATGTTTGGGATCCTCACAACTGCAGTGCGTATCTATCAAGATCGCTGGGGCTATGGCATTTATTCTGGGCCAATCGGGACAGCTGTATTGATGATTACTGTCAAATGGTTGCAGAAGATGAAGGAGAAGAAAGGCCTGTACCCAGAAAAGACTGTGTACACCCAGCAGGTGGGTCCGGGGTTCTGCTTCGGAGCCCTGGCCCTGATGCTCAGGTTCTACTTCGAGGAATGGGATTACGCCTACGTCCATAGCTTCTACCACGTGGCCTTGGCAATAGCCTTCATCCTCATTCTGCCGAAGACCAACAGACTGGCAGGCACAGGCAGGAACGCAGCCAAACTCAACTGCTACACCCTCTGCTGCTGTACTTCTAACACCTCCCAGTCTCCTGCAGCGTTGCAGTCCAGCGTTGAAAAGGAGGTGGAGGATCTTAAGAAGAGACAAGGGGAGTTGGACTTGGAAATCACACAGTTACAGACTGAagGGTTGTGTGTAGAAGAGCTGGACCAACACATCAGCCTGCTTCATGAATACAATGACATTAAAGACACTGGACAAATGCTGCTTGGCAGGCTGGGTAAGGCCCACTTAACAGAACTAGTTGTGATAGTTTTGACCCCCATGTCTTTTTAG
>TU76513
GGAAACAATCGCCTCCTTTTATAAAGAAGATGGTGATATTATCATTATGGACTCAGAAGAGAAAGCTACATTGGATTGCCAGGATGCCGATTGGACTAGCACTCCTGGAAAAGCAAGGGGTTGTTTAGCAAGAGGACTGGGGAGAAGCTCCAGACTTCTAACACCTCCCAGTCTCCTGCAGCGTTGCAGTCCAGCGTTGAAAAGGAGGTGGAGGATCTTAAGAAGAGACAAGGGGAGTTGGACTTGGAAATCACACAGTTACAGACTGAagGGTTGTGTGTAGAAGAGCTGGACCAACACATCAGCCTGCTTCATGAATACAATGACATTAAAGACACTGGACAAATGCTGCTTGGCAGGCTGGCAGCAATCCGAGGTGTGACAACAAAGGATGTGTATCGAGACTTCAGCATGGATTTGGAGGACTAATGTTTCTAGAGGAATGCCGTTCCTTTCTCCCTCATCCCGCATTGTCCTACTAAAGAGCATAATAGGGTAGCCTAATTGAAGATGAATTGAAGGGTGGGGCAGCAGAAAAAGTATTTCATAGTCTTCATGTAAGCAAAAAGACTAGTTTAACACACCATGGGTTATTTACAGTTATCGTTGGGGGCCTGCTCTATTATTCAAGACTCACCATTACAATCATAGTACTCAGATGGACGTTTTCCACTGGGTAGAAGTCAGATGACTCTGATAATCAAGAGTCCTAAGTCTTTAACACATTCATCATATTTATTGTTCAATTTATACATGTCAATTTATTTATCTTGCTGCTACCAGATATTTAGCAGAGAATATGCTTATTAAATTAAGACAGAGCAGTCTTTCTTGAGGCCTCTAAGATACTGTGAGTCTTTACAAGTGGAGCTATAATATTACACTGATTAATATACTGCCGTGTTGTTTGAGCTTGTCTCCCAACATCAGCCTCTGGAGGTGCAGCAGTTATCTCTTCCTCAAACACTAGCGATCGATGAGCAATCTTGAGACACAGAGTTGGACGCAGAGTTCCATGTATTGTCATAGGGACAGACTGGTTaaggaaaaaatgcaaaaatgtgcTCAGCATATTCAAATTATTGTGTCCATAATCATCTGCCATCCATGCAACTTTCATCAGTGCTGCCTGCACATGTATATGAGTTGTTGGTCAATGGTCATGATCAATGCTGACTTATTAGCTGAGTGATAGTGGGGAAATGTGGAAGTGGTGATTTATGACTATAAATGAAAGAAACTATTACAGCATATAAGGGCTGTCTGCATAAGACAAATATGAAGGCAGAACACATCCATGTAAGACAGACTGCGATATTTCAAAGACAAATGTACGTATATGCGTGGAAAAATActaatatttgaataatttcattttaaatgataaatgttgaaatatctCTCCAGGAAGTCTTCCATTTAAAAGGTGAACAAATAGTTTACTAAGTTTCACAACTTAGAGAATGCCATCAATCTTACCAAAGTGActttattgcttaattgcacTGAATATCAAGCTTTTGGTATATATGACACATATTTGGTATTGTTACTACGTGGCTTTAGGTCAAATTGATAGTTGCTTGGCCAATGTTCAGTCACATCTGTAAGAAAATTCTGAGATTTCAAAAGACTGACTTTCCTTATAATTACGTCTTTCCtcccttgtgttttgttttcttcagggaGTAACCAAAATAATTAAGCTCTACTGTACAACAGTGTCCAAGCttcttttgaaaatgtccttAAATAGAGCTGGGCTTGCCTCCCCTCTTCCTTCTCTTGTACAAATCGGTCTTTCGCACACTTCAAGATAATGAAAACTGCCGAGAGTCCTGTGAAGGAATAGGTCTGTGCATTTCGCCACATATTCTCCTGGGAGTCTGAGGTGATTAATAAAAGTGGCCTGACCTGTGGGAAGCTGTGTGAGTTTCTGGCCTTGACAGGTACAGTGCAGCAGGTTGTGAATGTTGCCTGAGGGCCTGGAGAAATGGCTGTTAACCTTGGTGAGTCAGGGGTTTTGGTGGAACACTATTGTGTGTAAGGAGCAGACACTTTCCACAGCCCTAGATGaataaagaaatgtgttgatACTGCTTAACAAGTAACCAGTTCTGTGAAATAGTTTcaaattgaaagtgtttttttttttgtatgtaaggGTGGGGAAGCATAGCTGTGTGAAGGAGCCACAATTCATTTTGGAAGCTGGGAAATGGGAAGGGGGTCTGGAACTACTTGTTTATATACTTTGAAACCTGTAAATACAATTGATTTCTtcatgtagtttattttcaatagCCTGATTGAATACATGTCTGACACATCTCATTTTACTGTGTCCTGTGTTAACACCACTCAGTGTAAAACACTTTTGAGTTATTTGTTCAACATGAAAGGGttcattgtgaaaataaaattttgcagacttttata

Function

symbol description
tmem8c protein myomaker

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0007520 myoblast fusion biological_process
GO:0045026 plasma membrane fusion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020129 False 924 mRNA 0.49 7 10738502 10752627
TU76513 True 2439 lncRNA 0.40 4 10748544 10755375

Neighbor

gene id symbol gene type direction distance location
AMCG00020130 NA coding upstream 41494 10696538 ~ 10697008 (+)
AMCG00020127 sardh,LOC107713264 coding upstream 110365 10607803 ~ 10628137 (+)
AMCG00020128 sardh coding upstream 141806 10559670 ~ 10596696 (+)
AMCG00020131 NA coding upstream 194138 10541777 ~ 10544364 (+)
AMCG00020120 NA coding upstream 200484 10532713 ~ 10538018 (+)
AMCG00020126 LOC107597661 coding downstream 645 10756020 ~ 10771515 (+)
AMCG00020138 NA coding downstream 249558 11004933 ~ 11008268 (+)
AMCG00020137 gapvd1 coding downstream 272286 11027661 ~ 11063288 (+)
AMCG00020142 pbx3b,LOC107669256,LOC107550583,LOC107555108 coding downstream 448474 11203849 ~ 11205492 (+)
AMCG00020145 mvb12ba,LOC102781577,LOC107654329 coding downstream 717157 11472532 ~ 11494336 (+)
G61095 NA non-coding upstream 231289 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 392111 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1314943 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 1330485 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 1488688 9249600 ~ 9249814 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 26391 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 253041 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 738251 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 1246325 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 1253417 12008792 ~ 12009100 (+)
AMCG00020122 urm1 other upstream 238996 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 950450 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 2687355 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 2853954 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 4550613 6182699 ~ 6187889 (+)
AMCG00020134 rabl6 other downstream 190217 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 518649 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1653587 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1764389 12519764 ~ 12542261 (+)
G61491 NA other downstream 1860417 12615792 ~ 12619817 (+)

Expression


Co-expression Network