AMCG00020137 (gapvd1)


Basic Information

Item Value
gene id AMCG00020137
gene name gapvd1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11027661 ~ 11063288 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020137
ATGGAGCAGAACAGGTCGCTGTTTTGGCCTTCTCCTGTCCTGTTGAAGATGGTGAAGCCAGACGTCCACACCCTTGCTCATCACCTCAAGCAGGAGCGGCTGTATGTAACCTCAGAGAAGCAGCTTATCCAGCGGCTCAACGCAGAGGTGCTGAAGACCGCAGAGAAGCTGTACCGTGCGGCATGGATCTCCAAACAGCAGAGGATCAACCTGGACCGCCTCATCCTCACCAGTGCTGAAGCCTCCCCTGCAGAGTGCTGCCAGCATGCCAAGGTGCTGGAAGACACTCAGTTTGTGGACGGCTATAAAACACTGGGCTTCCAGGAGAGCATCTATGGGGAGTTCCTCAGCCGGTTGAGGGAGAATCCGCGACTTGTGGCCTCCTGCCTGGTGACTGGCGAGAGGCTGAACCAGGAGCACACCCAGGGGGTCATCCACACAGTCTTCACCTCGCTGTATGGCAACTGCATCATGCAGGAGGATGAGAGCTACCTGCTGCAGGTGCTGCGCTACTTGATCGAGTTTGAACTCAAGGAGAGCGACAATCCAAGGCGACTGTTACGGAGGGGCACCTGTGCCTTCAGCATCCTCTTCAAGCTCTTCTCGGAGGGCCTGTACTCAGCCAAGCTCTTCCTGACCGCCACGTTGCATGAGCCCATCATGCAGCTGCTGGTGGAGGATGAGGACCACCTGGAGACGGACCCCAGCAAGGTGACGGAGCGCTTCACACAGGCCCAGCAGGAGCGGCTGTTTGGGGAGAAGGGCTCCGATGGCTACCGGCGCAAAGTCCAGGAGATGGTGGAGTCCAACGAGGCCAAGCTGGTGACCCTGGTCAACAAGTTCATCGGCTACCTGAAGCAGAACACCTATTGCTTCCCCCACAGCCTGCGCTGGATCGTGTCGCAGATGTACAAGACGCTGTCGTGTGTTGAGCGGCTGGAGGTTGGTGAGGTGCGCACCATGTGCACGGACCTCCTGCTCACCTGCTTCATCTGCCCCGCCATCGTCAACCCAGAGCAGTATGGCATCATCTCCGATGCCCCCATTAATGAGGTGGCCCGCTTCAATCTGATGCAGCAGTTGGCAATGGTGGGTACTGATGAAGGTGATCCTCGTGTGAAGAGCACCCTGTCAAAATTTGATAAGagctgtgtcgCTGCCTTTCTGGATGTGGTGATTGGCGGGCGGGCGGTGGAGACTCCACCCATGTCCTCAATGAATCTCCTTGAAGGCCTGACCAGGACTGTGGTGTACATGACCCAGAGCCAGCTCTTAGCACTGGTGGATTTCGTCAGGAACGTGATGTCGGGGGACCAGCTGCGAGAGGAGGAGCGCACGGCCCTGGACACCCTGCTTGCCAGCGTCCCGCAGTCCAGGACAGGCAAGAGCAACAGCCTGGAACTCACCCCCTCCAACACGCCCCAGCTCTCACCGGCCACCACCCCTGCCAACAAGAAGAACCGCCTCCCAATAGCAGCCTCGCGCAGCCGCAGCCGCTCCAACATCGCACAGGACCAGCAGGGGGAGCCGGAGGCCAGCTCCCAGGAGTCCCTGCAGGAAGTGCTGCCGGAGGAAGTGCTGGTGATCGCCATGGGTACTGCCCCTCAGACCGTTCCAGGGATGATGTCAGAGAATGAGgtgtTAACTATGCAGATGACAGATGGTGGTCAAGGCGAGGTGCCAGTGGATGACACTAAATTACACGGCAAGCCAGACAAGACCCTGCGCTTCTCTCTGTGCAGTGACAACCTGGAGGGCATTTCGGAAGGTCCTTCCAATCGCTCGAACTCGGTGTCCTCACTGGATCTGGAGGGCGAGTCCGTGTCTGAGCTGGGCGCTGGGCCGTCGGGTAGTAATGGGGTGGAGGCACTGCAACTCCTAGAGCATGAGCAAGCCACAACGCAGGACAACCTGGATGACAAGTTACGGAAGTTTGAGATCCGGGACATGATGGGACTCACGGACGACAGGGACATTTCAGAGACGGTGAGCGAGACCTGGAGCACTGATGTCCTGGGCAGTGACTTCGACCCCAATATCGATGAAGACCGGCTGCAGGAGATCGCAGGAGCCGCAGTGGAGAACATGCTGGGCAGTCTCCTGTGTCTGCCAGGTTCTGGCTCGGTTCTCCTGGACCCGTGCACTGGATCCACCATCTCTGAGACCACCAGCGAGGCCTGGAGTGTGGAGGTGCTGCCCAAGGCTCCTGACCTGAAACAGGAGGAGCGACTACAGGAGCTGGAGAGCTGCTCTGGTGTGGGCAGCACCTCCGACGACACAGAGGTGCGAGAGGTCAGCTCCCGCCCCAGTACCCCGGGGCTCAGTGTTGTCTCGGGTATAAGCGCAACCTCAGAAGATATCCCCAATAAGATTGAAGACTTGCGGTCCGAGTGCAGCTCCGACTTTGGAGGGAAGGATTCGGTGACCAGTCCGGATGGGGAGGAATCTGGACATGGAGCGCATCACTTAACATCGCCTCCTTGTCAAGTGGACTCTTTGCTTGCCATGTTTGATCCTCTCTCCTCTGGAGAAGGGCAAACGGGGCCCGCGGTGGTCAGGCCAAAGGTGCACTACGCCAGACCCCCACACCCGCCCCCCGACCCCCCCATCCCCGAGGCATATGCCACAGGCCAGGAGCAACGGCTGTCCATGTTCCATGGTCTGACAGTGGCGGAGCTGGAGCAGGGCAAACAGAGACACTCGTACCCAGAGCGCTTGGTACGCAGTCGCAGCTCCGACATCGTGTGTGCTGCCCGCCGGCCCACCAGCGACCCCGGGCTGAACCGCCGCATCAACGCAGAGGACCGGGAGCTGGTGGCGGGAATGCAGGCCTCCTTCAGCTTGGGGACCTCCTCATCCCCCAGCAAGGACTCGCTCAAAGGAGAGGCAGAGGACAGGAAAGACAGTGATGATGAAAAGTCCGATCGCAACAAACCCTGGTGGAAAAAGCGCTTTGTCTCTGCAATCCCTAAAGCTCCGATGGCGTTTCGAAAGAAGGACAAGATGGAGAAAGAAGACATGGGCCCTGAGCGCATTCCTCCCATAGATGAAATGGTACCCAGGTTGACCCCCCAGGTCCAAGCTGCTGAAGACATCCTGGACAAGTACAGGAACATCAAGAGGACTAGTCCCAACGAGGGGGCGTCATCAGCTCCCTACGAAGCGCCAGAAGCCTGCGGGGAAGGGGAGAGTGTCCATGACTCGCCCCGGGAAGAAGCTCTTCAGAACATCTCCGCCGATGATCTGCCCGACTCTGCCAGCCAGACGGCCCAGCCCCAGGACTCCAAATTCTCATTCAGCGATGCTAAGAAGAAGCTGAGGATGGCCTTGTGTTCAGCCGACTCTGTTGTCTTCCCGATTCTGTCCCACGCCACGACCAGGAACGGCCTGCCGGATCACACAGACCCTGAAGACAATGAGATTGTCTGCTTCCTGAAAGTCCAGCTGGCAGAAGCCATCAACCTCCAGGACAAGAACCAGATGGCCCAGATTCAGGAGACAACGCGCTGTGTGAGTCGCTTCGACAGCCGGACCTGCAGGAAGCTCCTGGCTGCCATAGCCGAGGACTATAGGAAGCGGGCTCCGTACATTGCCTACCTGACCCGGTGTCGGCAGGGCCTACAGACCTCCCAGGCCCACCTGGAGAGACTCCTGCAGAGGGTGCTGAGGGACAAGGAGGTGGCCAACCGCTACTTcaccactgtgtgtgtgcggcTGCTCCTCGAGAGGATGGAGGCAAAGATGCACGACTTCATCAAAGCGTTCCAGGTGTGCACGGCGGCCGACGACAAGACCGCTTCGGTGGAGGACTTCCTGCGCTACCTGTATGGCGCCATGGCCCACGATGCAATCTGGCAGTACGCCAGCGAGGAGCAGCTGCAGGACGCGCAGATGGCCATTGAGCGCAGCGTCATGAACTCCATCTTCAAACTGGCCTTCTACCCCAACCAAGACGGAGACATCCTCCGAGACCAGCTCCTACAGGAACATATTCAGCGTCTCTCCAAAGTGGtgacagccaatcacagagctcTTCAAATCCCAGAGGTGTACCTGAAGGAGGCCCCCTGGCCATCTGCACAGGCCGAGATCCGGACGATCAGTGCTTACAAGACCCCCCGAGACAAGGTGCAGTGCATCCTGCGCATGTGCTCCACCATCATGAATCTGCTGAGCCTGGCCAACGAGGACTCGGTCCCTGGGGCGGACGACTTCGTCCCCGTTCTGGTGTTTGTCCTGATTAAGGCCAACCCTCCCTGCCTGCTGTCCACCATTCAGTACATCAATAATTTCTATGCCAGTCGGTTGAGTGGAGAAGAATGCTATTGGTGGATGCAGTTCACAGCAGCAGTGGAATTCATTAAGACCATCGACGATCGCAAGTGATGCAGAACGCCACCTGTATCAGCAGACTGTCGGGGAGGAACGCAGAGGCCTGCGAACCAACTGCTCTCAACACCGGGGAAgagaggctttttttttctcagcttgtatattttgtacataGAGTTAGAGACctttaaaagacaaaagaaaacaaagcagtaTAAACATTATAAGAAAAAGATAGGTAGACATTTTactaaaaaatgcataaaataaatgaaaaccacaaaaaaagaaacaaaataattaaccttTGAATTTgactaattattttttgttagatTTCGGGGGGAGGGGCagaaattgttgttgtttgttggtttttgtttttcccctctctccagTAGTGTTGACAGGTTAGCACTGCATTTTAACGAtttcccaaaaaaaaaaaaataataaaaaaaaaaatgaaatgattcaaaatgaaaagggaCCACACTTCTAGGGGTGACTGCGATCTCACCAAGCTTTACgtggggggaaaaatatttacaaaaagcaGCACTTCTCCgaaatactgtgcatttgtcATCCCTTTCAGACAAAGTTATTCCTCttgcactaaaaaaaaaacatgattaccaGCACGCTTGTGGAGACTTCATTACTGCCATAGTGTCAAAGATAATGCGATGGTGATTGTGTGGGACTGTGGACAGGCTAAAGATGCTTCTAGCTTcctctcttttaaaaaaaaaaaatatttgtatctaaagaacattattcatatttgttaatcCTAGAGTGAGTGCTCTCGGATGAGCTGTGGACAGGGCAGCTTTTATCGCTCATGTCAGTTGAAAGtatgatttataaaaatgttttatttgttatgacTTGGCGAATATAGCTTCTCCAGTAAAAAGTTACTGGGTTACAGAGTCCTGAACTCTGGGtttaacctttaaaataaaataaaaaataaataaatgtcggCAATTGACACTTCTTCTATTGTAAATCACTGGAAATCTAAATccactgttttggtttgtgctTTCGTAATATTTTCACTTTGTTGGAAAATGTTTAACTTGTGTATCTGCCAAGTGGAGCTTAGTTCATATTAGGAATGAATGCACTTCCGCTCtgttacaattatttgttttatggttttgtgATTGGGAGGAGGGGGCATGGTTTAAGATTAATAGTTTAGGGTTAGTTTAGAGTATGAGACCGTTTCCATTGAGATCATGTCCTGTAACTGAAGCCATTTAGGAGATGGAGCTCAAACTATAGGAGTCTTGTTACAAATCCACTATGGAAATGGATCAGTGAggacattcattcattaatttattcattcattcattcattcattcattcatctaGATTCTAGAACCAGTGCCT

Function

symbol description
gapvd1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within endocytosis; regulation of GTPase activity; and signal transduction. Predicted to be located in membrane. Orthologous to human GAPVD1 (GTPase activating protein and VPS9 domains 1).

NR:

description
PREDICTED: GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020137 True 5742 mRNA 0.53 27 11027661 11063288

Neighbor

gene id symbol gene type direction distance location
AMCG00020138 NA coding upstream 19393 11004933 ~ 11008268 (+)
AMCG00020126 LOC107597661 coding upstream 256146 10756020 ~ 10771515 (+)
AMCG00020130 NA coding upstream 330653 10696538 ~ 10697008 (+)
AMCG00020127 sardh,LOC107713264 coding upstream 399524 10607803 ~ 10628137 (+)
AMCG00020128 sardh coding upstream 430965 10559670 ~ 10596696 (+)
AMCG00020142 pbx3b,LOC107669256,LOC107550583,LOC107555108 coding downstream 140561 11203849 ~ 11205492 (+)
AMCG00020145 mvb12ba,LOC102781577,LOC107654329 coding downstream 409244 11472532 ~ 11494336 (+)
AMCG00020144 mvb12b,LOC101173957,LOC104934585,LOC105922272,LOC103362447 coding downstream 443302 11506590 ~ 11521389 (+)
AMCG00020146 NA coding downstream 490915 11554203 ~ 11554448 (+)
AMCG00020148 lmx1b,LOC108236478 coding downstream 554217 11617505 ~ 11627135 (+)
G61205 NA non-coding upstream 15916 11008416 ~ 11011745 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding upstream 243763 10781766 ~ 10783898 (+)
G61095 NA non-coding upstream 520448 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 681270 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1604102 9423337 ~ 9423559 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 430338 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 938412 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 945504 12008792 ~ 12009100 (+)
G61332 NA non-coding downstream 948373 12011661 ~ 12011876 (+)
G61333 NA non-coding downstream 948672 12011960 ~ 12012407 (+)
AMCG00020134 rabl6 other upstream 58063 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 272286 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 528155 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 1239609 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 2976514 8044275 ~ 8051147 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 210736 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1345674 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1456476 12519764 ~ 12542261 (+)
G61491 NA other downstream 1552504 12615792 ~ 12619817 (+)
G61675 NA other downstream 2286389 13349677 ~ 13350712 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_03352656_03382618 GAPVD1 coding CI01000052 null 3352311 ~ 3382618 (-)