AMCG00020138


Basic Information

Item Value
gene id AMCG00020138
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11004933 ~ 11008268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020138
ATGACACGAACAGACCCTCCTGATATACTGGTATCGACTGTGTATCGAGACATTAAAGTGAACCCCAGCTCTACGCACTCCAGGTCCTTCCACCCGTCTACACAATGTGATTCCCACATCCTCAGCACGCTGGATCAAAATCAGGAAAATTTCAACAAAAGACATTGCCGCAGCTTTGACTTCCTTGAGTCATTGGACGACCCCAAAGCTTGTACTTCGTCAATGGAGTACCCATACAGGAGGACTGACAGGCAGATACCGAACCCAGATGTGGCTTGGAATGCTCTGGCTCAGCAGGGTCACCTCCGGTTCTCCTCGCCGGATCTGTTCAACTCCAGACTGCCTCCTCAGCACACTGCTGAGGCTGTGAGTGAGGCAAGCAGGGCTGACCTGAAAAGGAGGGCCCGTTCAAAAAGCGCCCCCAGGGTGAAGACTACCTTCACTCCAGTGCCCATCGAGGTGTCTCCTCCACCCatgaggagggggagagaggttCAACGAGCTCCAAGGGATCCCCCAAGGAGACCAGAGGCGTCCCCACGTCGGGAAGCCTCTTACTCCTCTTATGCCTCTTATGCCTCGAACCGAGCCTTGATGAACGAGGTTCACCCTATCAAACTGCAGCCACAGAGGGGAGATTCCAGCCGCTACTCGCCTTTGTTTGTCTCTGATTGCTTTGACGAGACCAGACAAGACAAACAGGCCACGAGTCCTCACGTCAAGTGCCGTGTGGACATCAAGCCGGACGAGGCTGTTCTGCAGCACACCGTGAAGACTGTGAAGCCACCGACACCCAGGGCAGAGGTTCCCTGGCAGCGGTACCCAAGCGGGGGAAGCAGAAGCTTGATCGTGCCACGCCagctctcctcctccaggacACCCACTCCCAGTGATTCCTACAGTGGGGAATACCGGCAGGGGTACCAGTATCACAACTGCACGCCAACTGACTATAATCCCCCAGTGGAGGTCCCTTTGCAAAGGATGCCCTCTCCTAGGGATCCCAGGGAATACCAAGGAAGAGAACGCAGGGCTTTCTCCAGTCCCAATGTGCCAACCAAATATTTTTACACTGAGGACCTTGGCAGGTACCCTGTTCCTGCTCCTGTTCCTGCAGCTCCACCTGCCAGGACTTTCTATCCGGAGGAGCATTACAGCTACCCTAGCCAAAACGTTGCTCCCAAAGTACAGTACGGCCCAGACCCAAGAACTCGCCTGGTCCACACTGTCCCCACACGGCCATATTATACTGAAGAGCCACGCCAATACCCTGTGCAGACTATGTACCCTAAACCATATTCCACCAGTGAGCCCCAGCCATACATTATCCAGACCGCCCCTTCTAGGACATACTATGGAGTGGACTCCAGAGCCTACCCAGTTCAGACAGTCCCATCCAAGATGTTTTACACAAATGAACACTTTGTACCCCCTCCAGAGCACCATGTCCCCTCGAGAGCATATCATACGGAAGGCCGTCGTCACCCAAGAATGTCTCAGCCTCAGTTTAATGAGTGGTACGGGTCTGATTTAACTGGCTATGCTACACACCATCCATCCTCGCACATTTCTCAGTACCCACCCCAAAGAACCAGGCAGGAACCCATGCTTTCTCCTTGGTATGGCTCACACTGCTTGGAACAGACCAGGTTAGGCACAGACTCTAGGCCCTACTCTAAATCCTGGGACAACATCCTTAACCCCAATGTAGAAAGGGAGCAGCCAGTGCAGCGTGGTCGGAGTTATGAGAACCTCCTCCACCAAGGGAAGCGTGCCTTGTCCCCAGATGAACGGAGACAACCAGTGGTGGTCAACCTCTCCAGCTCACCCAGGCGTTATGCtgccctgtctctgtctgagAACTCACTGATGGAGAAGGTCCGCTTAGACAGTGGAAGGAACACCCTGGGGCGACTCTGGTACGTGACCCCAGAGATCACAATCACTGACAACGACATCCGGCCCAACAGCCTCAGCAAGACCGAGGTACGCTCTGCCAGCTGGGACATGCTGGACTCTGGCAATGTTTCAGGTCCAAGTGTTTCTTACCAAGACCCACGTTCATACATGGCAGAAACTACCAAAGAGAAGACCCACAACAGCTCCTCCCTCCAGCAGAGCCTAGAGCAGCTAGATGAGCTTCTAGCTGACCTTGTCATTGACTACAAACCGCCTGCCAGTAGGAGACCCAGCGAGGACTTGCTGGACCAGCTCAAGAAGCTGATCAATGAGGATGAAACTGGGCTGTCAGCCAGGAAAGAACACATCGAGTCCAATAATCCAGCTCCCCTGAAAAAACAGCCCACTTCTATAAAACTGAGCCCTGATGCTCATAGAAACCTGGATAGCAGCTGCGACGGTCTCCAGAAGAGCAAGGAGGAGTGCTCCCCAGATCAGAGCACAGACGAGGACGACACCATGATGTGCTCCAACAGCAAGTGCAGGCGGACGGAGACCTTGTTCAATGCCTGCCTCTACTTCAAGTCCTGCCATAGCTGCTACACCTACTACTGCTCGCGCAACTGCCGCCGTGAGGACTGGGATATCCATAAGGAGAGCTGCCTCTACGGACGCATAGGTAGTGTCTGCAGGCATATCCTCAAATACTGCCGGGAGTACACTGAAATCCACAAAGCCTTCTCCCGCATCGCCAAAGTCGGCTTCCTGTCCCGCGGGAGGGGTGTCCTCTTTCTTGGTTTCCCCAACCCAGGGTCAGCTGACAACTTCCTGCAGTATGGCCTGGAGAGCCTCCTGATGTCCCCAACCTACCTTTCCCTCAGGGAGTTGGATGGTTTCAAGGACAACCTTGGGGAATACTGCAAGGAGCTCCAGGAAGCAGGGAATGAGTATGACCCCGACGAATGTTTCCTCTTGAATGTATCCATAGCTGTAGGAGAACAAGTGCCTAACAGACCCTCCCCCAGAGTCCAGGCCCCGACTGTGAGGAAGTATGCCAAGGTCTCCCTGGCCTCCTCCAGCCCAGAAAAGAAGATCCTGAGGAAGGAGAGTGACATGGAGACTCTGATCCTCACCCCTCCACCAGGAATGGCAGACATTGACAAAGAAGGAGAGGAGGGCAGGAAGGCCAGGGAGATATGCTTCATCAACATCCAAAGGGAGCTGAGGACCAGGGGGGTCTTTCTGCGCCACGAATACCCCAAAGTCTACCAGCAGCTCTGTGAGTTTGTGGAGAGTAATAAGAGGTTCACCCCTACCTCCATTTACCCCATAGACAAGCGCACTGGAAAGCAGTTCATGTGTATGATCATGGCAGCCTCTGAGCCAAGAACCCTCGACTGGGTGGGCACCCCTCATCTCCTGGATGACATTATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020138 True 3336 mRNA 0.54 1 11004933 11008268

Neighbor

gene id symbol gene type direction distance location
AMCG00020126 LOC107597661 coding upstream 233418 10756020 ~ 10771515 (+)
AMCG00020130 NA coding upstream 307925 10696538 ~ 10697008 (+)
AMCG00020127 sardh,LOC107713264 coding upstream 376796 10607803 ~ 10628137 (+)
AMCG00020128 sardh coding upstream 408237 10559670 ~ 10596696 (+)
AMCG00020131 NA coding upstream 460569 10541777 ~ 10544364 (+)
AMCG00020137 gapvd1 coding downstream 19393 11027661 ~ 11063288 (+)
AMCG00020142 pbx3b,LOC107669256,LOC107550583,LOC107555108 coding downstream 195581 11203849 ~ 11205492 (+)
AMCG00020145 mvb12ba,LOC102781577,LOC107654329 coding downstream 464264 11472532 ~ 11494336 (+)
AMCG00020144 mvb12b,LOC101173957,LOC104934585,LOC105922272,LOC103362447 coding downstream 498322 11506590 ~ 11521389 (+)
AMCG00020146 NA coding downstream 545935 11554203 ~ 11554448 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding upstream 221035 10781766 ~ 10783898 (+)
G61095 NA non-coding upstream 497720 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 658542 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1581374 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 1596916 9407657 ~ 9408017 (+)
G61205 NA non-coding downstream 148 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 485358 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 993432 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 1000524 12008792 ~ 12009100 (+)
G61332 NA non-coding downstream 1003393 12011661 ~ 12011876 (+)
AMCG00020134 rabl6 other upstream 35335 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 249558 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 505427 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 1216881 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 2953786 8044275 ~ 8051147 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 265756 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1400694 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1511496 12519764 ~ 12542261 (+)
G61491 NA other downstream 1607524 12615792 ~ 12619817 (+)
G61675 NA other downstream 2341409 13349677 ~ 13350712 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_01862707_01865958 UNM_HU7912 coding CI01000010 null 1861942 ~ 1865958 (-)