AMCG00020142 (pbx3b,LOC107669256,LOC107550583,LOC107555108)


Basic Information

Item Value
gene id AMCG00020142
gene name pbx3b,LOC107669256,LOC107550583,LOC107555108
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11203849 ~ 11205492 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020142
cCCTTTTCGCTTTGCGTGGCTCCGAAAGAAGCGCATTGATTGTGCTGCGGCAGAGCATGGACGAGCAGTCCCGGATAATGCAGACCCTCGGCGGTGTCAGCCTGGCTGGCCACTCGGTGCAAGGGGGGATGGCTCTGCCTCCCCCGCACGGACACGAAGGGACGGACGGGGACGGAAGAAAGCAAGACATCGGGGACATCCTGCATCAAATCATGACCATAACTGACCAAAGTCTGGACGAGGCGCAAGCAAAGAAACATGGACTGAACTGCCACAGAATGAAACCTGCCCTCTTCAGTGTCCTCTGtgagattaaagaaaaaacagCCAAcgtaatacatttaaag

Function

symbol description
pbx3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; eye; and telencephalon. Orthologous to human PBX3 (PBX homeobox 3).

NR:

description
pre-B-cell leukemia transcription factor 3 isoform 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020142 True 347 mRNA 0.54 3 11203849 11205492

Neighbor

gene id symbol gene type direction distance location
AMCG00020137 gapvd1 coding upstream 140561 11027661 ~ 11063288 (+)
AMCG00020138 NA coding upstream 195581 11004933 ~ 11008268 (+)
AMCG00020126 LOC107597661 coding upstream 432334 10756020 ~ 10771515 (+)
AMCG00020130 NA coding upstream 506841 10696538 ~ 10697008 (+)
AMCG00020127 sardh,LOC107713264 coding upstream 575712 10607803 ~ 10628137 (+)
AMCG00020145 mvb12ba,LOC102781577,LOC107654329 coding downstream 267040 11472532 ~ 11494336 (+)
AMCG00020144 mvb12b,LOC101173957,LOC104934585,LOC105922272,LOC103362447 coding downstream 301098 11506590 ~ 11521389 (+)
AMCG00020146 NA coding downstream 348711 11554203 ~ 11554448 (+)
AMCG00020148 lmx1b,LOC108236478 coding downstream 412013 11617505 ~ 11627135 (+)
AMCG00020147 NA coding downstream 468218 11673710 ~ 11699838 (+)
G61205 NA non-coding upstream 192104 11008416 ~ 11011745 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding upstream 419951 10781766 ~ 10783898 (+)
G61095 NA non-coding upstream 696636 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 857458 10277466 ~ 10346391 (+)
G60888 NA non-coding upstream 1780290 9423337 ~ 9423559 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 288134 11493626 ~ 11521381 (+)
G61329 NA non-coding downstream 796208 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 803300 12008792 ~ 12009100 (+)
G61332 NA non-coding downstream 806169 12011661 ~ 12011876 (+)
G61333 NA non-coding downstream 806468 12011960 ~ 12012407 (+)
AMCG00020134 rabl6 other upstream 234251 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 448474 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 704343 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 1415797 9784117 ~ 9788052 (+)
AMCG00020053 NA other upstream 3152702 8044275 ~ 8051147 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 68532 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 1203470 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 1314272 12519764 ~ 12542261 (+)
G61491 NA other downstream 1410300 12615792 ~ 12619817 (+)
G61675 NA other downstream 2144185 13349677 ~ 13350712 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036577 pbx3b coding NC_007119.7 CM002892.2 33895773 ~ 34065573 (-)
grasscarp (Ctenopharyngodon idella) G224741 NA non-coding CI01000052 null 3183297 ~ 3185834 (+)