AMCG00020150 (ralgps1,LOC108412534,LOC107723240)


Basic Information

Item Value
gene id AMCG00020150
gene name ralgps1,LOC108412534,LOC107723240
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11768917 ~ 11811842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020150
ATGTACCGCCGGAATGGGCTGATGGCCAGTGTCACGGTCACCTCCGCCACTCCAGAGGGGAGCAGTAGCTCAGACTCCCTGGATGGGCGGAGCGTGGACTATGCCAAGAGCTACGATGCGGTTGTATTCGATGTACTGAAAGTCACACCTGAGGAGTTTGCGAGCCAGATAACGCTGATGGATGCCCCGGTGTTTAAAGCGATACAGCCAGAGGAGCTGGCCAGCTGTGGGTGGAATAAAAAGGAGAAGCACAGCCTGGCACCCAACGTGGTAGCGTTCACCAGGAGGTTTAATCAGctGATCAACCGGAAGGACAAAGCCACCTTTGAGAAGCTCGACTACTTGACCTCCAAGGAGGAGAACTACACTCGCATGAGGGAGCACATCAAGTCTCTGAAGATGGTCCCCTCCATCCCTTATCTGGGAAGCGGAGACAGGGCTCTGAGTATCggcatctctccctctctcgcttaCTGCCTGTCAGCTAGGAAGTCTCCATCCTCTCCCACTCTGCCAGCTGGAAATGTCATTAGTGCTCACATAGCTTTTCTGGAGGATGTGTTTGATTTTACGTTTGAGTGA

Function

symbol description
ralgps1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human RALGPS1 (Ral GEF with PH domain and SH3 binding motif 1).

NR:

description
PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020150 True 582 mRNA 0.54 6 11768917 11811842

Neighbor

gene id symbol gene type direction distance location
AMCG00020149 NA coding upstream 53817 11713547 ~ 11715100 (+)
AMCG00020147 NA coding upstream 69079 11673710 ~ 11699838 (+)
AMCG00020148 lmx1b,LOC108236478 coding upstream 141782 11617505 ~ 11627135 (+)
AMCG00020146 NA coding upstream 214469 11554203 ~ 11554448 (+)
AMCG00020144 mvb12b,LOC101173957,LOC104934585,LOC105922272,LOC103362447 coding upstream 247528 11506590 ~ 11521389 (+)
AMCG00020152 ralgps1,LOC105905312,LOC108412534,LOC107727327 coding downstream 68240 11880082 ~ 11923630 (+)
AMCG00020154 NA coding downstream 131437 11943279 ~ 11944400 (+)
AMCG00020156 NA coding downstream 180350 11992192 ~ 11995111 (+)
AMCG00020157 NA coding downstream 345699 12157541 ~ 12172006 (+)
AMCG00020163 ptpa,LOC102782294 coding downstream 373992 12185834 ~ 12198647 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding upstream 247536 11493626 ~ 11521381 (+)
G61205 NA non-coding upstream 757172 11008416 ~ 11011745 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding upstream 985019 10781766 ~ 10783898 (+)
G61095 NA non-coding upstream 1261704 10506399 ~ 10507213 (+)
G61064 LOC103376870 non-coding upstream 1422526 10277466 ~ 10346391 (+)
G61329 NA non-coding downstream 189858 12001700 ~ 12003127 (+)
G61331 NA non-coding downstream 196950 12008792 ~ 12009100 (+)
G61332 NA non-coding downstream 199819 12011661 ~ 12011876 (+)
G61333 NA non-coding downstream 200118 12011960 ~ 12012407 (+)
G61335 NA non-coding downstream 203856 12015698 ~ 12016151 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 468885 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 799319 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1013542 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 1269411 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 1980865 9784117 ~ 9788052 (+)
AMCG00020171 rpl12 other downstream 597120 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 707922 12519764 ~ 12542261 (+)
G61491 NA other downstream 803950 12615792 ~ 12619817 (+)
G61675 NA other downstream 1537835 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1975172 13787014 ~ 13792944 (+)

Expression


Co-expression Network