AMCG00020181


Basic Information

Item Value
gene id AMCG00020181
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12652216 ~ 12654743 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020181
ATGGAGAGGAGaataaaaaagaagaggaaGCCGTCGCAGCAGCAGCCAGTCCCTGGACAAGACGGCCACCATACCCCGTCCCACActctcctGCCacacaggagaggggagggCCGTGGCAGTGGCTGTGGGGGATTCTTCAGTAGCGCTCCTCCCATTCTCCAGAGCTGCCTATCTCCCCTTCCTCTGTCAGGCGATCCTCTTCCCACCCCGACTGTGTGTTCCCTGATGGCTGTTCCCTCggcaccccctgccccccccggCGTGCCAGAGTGTCCCATCTGCTTCTCCGCCTATGACAACGCCTTCCGCAGCCCCCTGCAGCTGCCCCCCTGCACCCACACCTTCTGTCTGCAGTGCCTGGCCCAGATGTGCCTCTTCCTCAAGCCACCCCAGAGCTTCCAGTGCCCCCTGTGCCGGGCGCATGTGCCCTTGCCCACCGGTGGGgccccctgcctccctcccaACATGGAGGTGGTTTCCCAGCTGCCCCTGGGCCAGAGAGGGGGCTTGCAAAGGGTCTGGCTAGAGGGATCGCAGCTGTGCTACTGGAAGACGCAATCGGCCTACAGCCCCAAACGTCTGATACATGACCCTGGAGAGGACATGGTGGTCAGGCTGCAGTTGACCAGAGTTGCCCCGGGCACGTCCAACTCTGGACCTCTGGACCTGGTGACGGTCTGGACACCGAGGTGGCTGCGCTGCAGGGAGGTGTGGCGCAGTTTCTGGTTTCTCACGACAATGGTCACTCTGAGCTTCATCATCCTGTTTTGCACCATCTTCTTCCCCATCTACATCCTGGGCCGGGGGCCCTGAATccaggggggagggggcacaCTAAAATGCCCACCTGCCTATCACCAGCACAGGCATCCACTGAACTTTCGCCCCTTCTCCCCAATCTCATGGAATTAATATAGTTCTCCTCTGTGACATAGGAGGACAGCTGGGGTGTTGGAGTCTGCTCTCCCTCCCAGCTCCTCTCCTCTCGCTGTGCTTTATCCTGGCCTAGGAGTATTGTTGTACAACTGTGGGAGACGAATGGGAAACTGTATTAGGAGACttgccacaaaaacaaacaaacaaacaaaaaacaagttgtGTGAGAACAGTCCGTAAGCAGTGCTGCTAGTCAAGTATCTGACTTATTGGAGTAAGAACTGCTGCTtcagttattatatatatgagtTCAGTACAACACCTTTGCACTTACTTTAGGTGTGATGAATTACAGATTGTGTTTATCAATCAAATTTGAAAAGCAATGCCGTTCTGAATACTCTTACTGTTCCATTCAGGGAGCTTACGTTCCATGAGGTCTGTCGATTCCTCATCAGTAACCATGGCAaactcatattaaaaaaaaaacaattgtagcAAATAACCTTATTGCTTCAGTGGAGAAGTTGTAAAATATGAAgcagtgtatctgtgtgtaaatgtaatgcCCAGAAAATGCTGATCAAAGTGTCTATACCAATATGCTGGACTGATGCTCGGGGATCCCCTCTTTCCTCCTCCACAGGTGTGTGACCCCAACACGGACAATGCCAACTCTGAAAACTAACCAGAATATGAGGAGAAGGCAGGTCACATTGTGTACTTGTGCTTTTAATATTGAGTGTTAGATAAAGAGTTGGGGGCAGGGTTCTGACTACTGTCATTATTTTCGCTGATGTAAATAACTTTTACAGTCAGCGGACCAGCAGCCAGAGCAGGGGAATGTGTTGACAGCACTTTGGCCTGGAGTGGCAGGTCTGTTTTAAAAGTAACAGCCAGCTTGGAAATTGGAAAGCGTTTCTATcactgcagaaacaaaacaggacTATGATTCTATCTGTACAGTTTACTTCCTGTTTCTACCTATTTTTGGTTGATCTTTTTTAAcatcatttcaataaataaaacctaaaggta

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020181 True 1917 mRNA 0.51 2 12652216 12654743

Neighbor

gene id symbol gene type direction distance location
AMCG00020182 NA coding upstream 452 12651159 ~ 12651764 (+)
AMCG00020176 NA coding upstream 87773 12563160 ~ 12564443 (+)
AMCG00020169 NA coding upstream 170311 12479904 ~ 12481905 (+)
AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding upstream 199431 12448768 ~ 12452785 (+)
AMCG00020170 NA coding upstream 221064 12428416 ~ 12431152 (+)
AMCG00020187 NA coding downstream 10165 12664908 ~ 12690345 (+)
AMCG00020191 nrarpa,nrarp coding downstream 80132 12734875 ~ 12735213 (+)
AMCG00020192 NA coding downstream 147315 12802058 ~ 12815332 (+)
AMCG00020206 NA coding downstream 594014 13248757 ~ 13255291 (+)
AMCG00020213 LOC102780640 coding downstream 648667 13303410 ~ 13330177 (+)
G61460 NA non-coding upstream 66560 12582261 ~ 12585656 (+)
G61435 NA non-coding upstream 145617 12417810 ~ 12506599 (+)
G61440 NA non-coding upstream 147617 12484377 ~ 12504599 (+)
G61434 NA non-coding upstream 183923 12414999 ~ 12468293 (+)
G61338 NA non-coding upstream 522645 12126842 ~ 12129571 (+)
G61568 NA non-coding downstream 175229 12829972 ~ 12852064 (+)
G61588 NA non-coding downstream 343107 12997850 ~ 12998227 (+)
G61650 NA non-coding downstream 682253 13336996 ~ 13338088 (+)
G61668 NA non-coding downstream 686210 13340953 ~ 13341315 (+)
G61669 NA non-coding downstream 686736 13341479 ~ 13341699 (+)
G61491 NA other upstream 32399 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 109955 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 237265 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1352184 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1682618 10945592 ~ 10969598 (+)
G61675 NA other downstream 694934 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1132271 13787014 ~ 13792944 (+)
G61894 NA other downstream 1178427 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 1208734 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 1228082 13882825 ~ 13885116 (+)

Expression


Co-expression Network