AMCG00020187


Basic Information

Item Value
gene id AMCG00020187
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12664908 ~ 12690345 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020187
ATGCGCCGCTTGAGCCGCTTCCGACAGGCATTTCCGGGGGGTACTGAGAGGAGCCGCCAACAGGAGGGTGAGACAGTGACCAGGACATCCAGACTGAATGATGAGCAAAGGGTCAGCACTCCAGGCAATTTGCTCTTCTACTCTCCAGCTGACCTCCCGGGGGTGTCAGACAGGGGTCGTTGGGAAGTGATAAGCTGTGCTGCCTGGAAGCTTCCCAGCCTGGCAGGAAGGGCAGCTCCGTGCCAGCACTTCCTGCCCAACTCTGAGAGCGAGCAGGCCTGGGAACAGATGCAGAGGGAGATGGGGATAGGGAGGAAGGGCACCTGCAGTGCCATCCTGACTCTGCCCGTGCTGTTCCTTGCCCACGACTCGGCCTGGACACCCTCCTGTTTCCCAGGTTTGGACCCTGAGCAGCTCAGAGATCGCTTGCTCGGACTCTGGGCCAAGAGGGAGATTGCAGAGCTCCGCGTCGTGGCTCAGCAGGGCTTCTCCACCCTTGGGGACCCCCTGTGGGGGCTGCTGACCATCCTTGAGAGCTGTCCCGGGACACAGAAGGGGAAGGGGTCCTCCCTGGGCCACTGTGTGCTCATAGAGTTCCAGCGTTGGCGAGAGAGCAATCCCCAAGCCAGCCTGCAGGGGGAGTCAGTGGCCCGGGTGCGCAGGCTGCAGGTTCAGGCCCTGGGACTCCTCAACGAGACTCAGCCCAGCTTCATTGACCCATTTCTGGACATCTTCCAGCTCCACACCCTGGATCGAGACTTACTGCTAGGGCATgcGGTGCTGCTGAGCGGGAGGCTGGAGCTACAGTCAGACCTGGACATGGAGCAGgtgtgcgTCCCCCTGATTCTGCTGGACAAGCTGCCCCTGGCGGAGATGTTTGTGAGTGGACACCCAGAGCTGCAGCAGCGGCTGGTCAGGCTGCTGGACTCCTGGTGCAGCCTGGACTTCAACACCACAGACCTGTTCAGCCAGTACCCACAGCTCCTTCTCTCCCAGCACTGCGTGGAGCGCCTACATCCCAAAATACTCAGCAAACAGGTGTTCAGACTGATGGACCTGTTCAGCATTGACCCAGCCCTCTGCCCCAATGCAGTCACCAAGAGACGGATGGATTCCCTGAAATTCCTCATGTATAAAACGTTTAGGGAGAAAAGCATGTCTGAGGAGAACTGGACTGACCATGTGCAGACCTTGGTGGATGACAGCGTGGAGCTGCAGTGCCAGCTGGTCTTGCTGCTGGTAAGGTACGACGGGCTGCAGAGCGCCGCCCGGTGGGCACAGCGGTACTGCCTCCCCCGTGACCGGCTGCCCTTCGGGGTCTGGGACCACATGGAGAGCCAGCCATCACATACACTTGCCCAACCCGATGTCCCCCTAACATCCACGGCCACCTGGGACCACGCCCCTGGCAGGAAGGACAACTACTACCAGCTTCCTGTCCCAAAGGACTGCATTCACTTCCTGGATACAGCAGAGGGTCTGGGGCGTTGCCAGGAGGAGGTGCTGAAGcccggggtggtggtgggggttgaTATGGAGTGGCGCCCTACTTTCGGCTCCGTGTCCCGGTCACGGGTGGCTCTCATCCAGCTGGCAGTGCAGGGCTCGGTGTTCCTGCTGGACCTGTGCAAGAACGGTGGGCCCCTGGACCAGGCCCGACTAAGCCTGCTCTCCACCTTCATTCGGGCCCTCTTCTCTGATGCCAGCATCACCAAACTTGGATATGGGATGTCAGGGGACCTGCGCAGTCTGTCTGCCACCTGGCCGCAGTTCACCGAGGAACCCCTGGAAGTCTCTGGAATGCTGGACCTGCTGACCACTCATCAACAGCTCCAGCGAGCATGTCGGGGAGTGCGGAGATGGCCACGGGGCATTGAGACTCGGGAGGGGCCTGCGGAGAAGGGACTCAGCCTGCTGGTCCAGATGGTCCTGGGGAAACCTCTGGACAAGACCGAGCAGCTGTCCAACTGGGAGAGGAGACCACTGAGGGCCAGCCAGCTCCAGTACGCAGCCAACGATGCGTACTGTCTGCTGGAGGTGTTTCACACCCTGTCTGAGGACCCTACACGCTTTGGCCTGCCACCTGACTTCCGCAGCGCCCCCACAGACCAGCCGGGGAAGGGCAGGCCCAAGGAGGGGAAGAGGAGAGCCAGGGACAAGCAGAAGCAGCCCAAGCAGAAGCAGGCACCCCAGCATACGCCCAGTGCAGAGACAGAGGACCCTCCCCGTCCGTCAGACCGCCCGTCCCTGGTCACCTCTGACCTCGCTGTAACCCCTGACCCCATGACCCCCCAACAGCTGCATGTGGTCTGCGACAACATGCTGCAGGGCCTGGGCCGCTACCTGCGCTGCGTGGGAGTGGATATTGCCAGAGGAGAGGGGCGAATCATCCTTACCTGCGGACAGCCCTACCAGACGCTGAAGTCCCAGGTGGGTGAGGGTCGCTGTGTGCTGGTGGACTGCTCCGAGAGGGCGAGGGACCAGGCCCTGCGTGTCCTGCGCCACTTCCACATCCAGGTCACCCACGCAGACGTATTCAGCCGCTGCCAGGTAAGAGAATTCAGTCAGCTGGCCTGCTACCTGATACCCAGCCGGGCCCAGGCAAGCGCGGCCCCACAGAGGGCCAGGGCAGAGCTCCACACTGCCTGGGGAAGGGACAGGCAGCCCTCCCAGGCGGCTTAA

Function

GO:      GO:0008536

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020187 True 2682 mRNA 0.62 22 12664908 12690345

Neighbor

gene id symbol gene type direction distance location
AMCG00020181 NA coding upstream 10165 12652216 ~ 12654743 (+)
AMCG00020182 NA coding upstream 13144 12651159 ~ 12651764 (+)
AMCG00020176 NA coding upstream 100465 12563160 ~ 12564443 (+)
AMCG00020169 NA coding upstream 183003 12479904 ~ 12481905 (+)
AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding upstream 212123 12448768 ~ 12452785 (+)
AMCG00020191 nrarpa,nrarp coding downstream 44530 12734875 ~ 12735213 (+)
AMCG00020192 NA coding downstream 111713 12802058 ~ 12815332 (+)
AMCG00020206 NA coding downstream 558412 13248757 ~ 13255291 (+)
AMCG00020213 LOC102780640 coding downstream 613065 13303410 ~ 13330177 (+)
AMCG00020218 NA coding downstream 746397 13436742 ~ 13451791 (+)
G61460 NA non-coding upstream 79252 12582261 ~ 12585656 (+)
G61435 NA non-coding upstream 158309 12417810 ~ 12506599 (+)
G61440 NA non-coding upstream 160309 12484377 ~ 12504599 (+)
G61434 NA non-coding upstream 196615 12414999 ~ 12468293 (+)
G61338 NA non-coding upstream 535337 12126842 ~ 12129571 (+)
G61568 NA non-coding downstream 139627 12829972 ~ 12852064 (+)
G61588 NA non-coding downstream 307505 12997850 ~ 12998227 (+)
G61650 NA non-coding downstream 646651 13336996 ~ 13338088 (+)
G61668 NA non-coding downstream 650608 13340953 ~ 13341315 (+)
G61669 NA non-coding downstream 651134 13341479 ~ 13341699 (+)
G61491 NA other upstream 45091 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 122647 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 249957 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1364876 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1695310 10945592 ~ 10969598 (+)
G61675 NA other downstream 659332 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1096669 13787014 ~ 13792944 (+)
G61894 NA other downstream 1142825 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 1173132 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 1192480 13882825 ~ 13885116 (+)

Expression


Co-expression Network