AMCG00020217 (pou5f3)


Basic Information

Item Value
gene id AMCG00020217
gene name pou5f3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13456679 ~ 13461481 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020217
ATGTCTGAGCGCTCGGCCAGCCCGGTGTCGGACTGTGGTACTCGGCACCACGACCCCAACACACCGATGTACCTCCAGGACGGATTCTCGGCGGCGCCTCACCAGTACACACACCCTGCGCTGCAGGATCCGCAGCTGAGGTTAAACAAGAcccccgccgccgccgccgctccCTCGTATACCGGCATCGCCCCTCCGCCGCAACACTTCTTCCAGTTCGACTACCGGCACGCCGAGTTCCCGGGCAGCGACGCGGGCGCGACTCGGCAGTGGTGCGCGTTTCCCGCTGCGGAGATCACGGGCCGGGTCCCTGGGGCCACGGCCACCTCCGCTCAGCCGGACAGCCCGAGCCCGCCGATCGCCGAAACCCGTGAACACGTTCAAATAGCCAACATCAAAGCCGAGAGAGAGGTGGACAGTTATTCCCCGGACCCTAAAGCCACCCAGGCGTCCGTACAGCCACTCCACGCCGCCGCCTCCTCCAGTATGGCCCACGGACTTTATTACTCTGCCCCCTGGAGTCCCTCTTTCTGGCCGGCCCTGACGCACAGTTCTGCCCAGGTCCAAGTCCCGACCCAGGCTGCTGCAGctcccccaccctcctcctcctcctcctcttcttcttccccctctgtctctccatcaCCCACGGGCCACAGTTACCCTGCGTCGGGGTTTTACATGGCGACGGGGACCCCAGGACTCAACGCCCCGTTACTGCAAAACTTGAACCCGAGGAGTTGCGGCTCCTCCAGTGGCGCTGGTAGTGACTCGGAGGAAGAGATGTTCAGCCAGACGACGATCTGCCGGTTCGAGGCGCTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCGCTACTGCAGAGGTGGCTGAACGAAGCAGAGACGTCAGACAACCCCCAGGATATGTACAAGATTGAGCGAGTGTTCCTGGACGCtcggaagaggaagaggaggacgagTCTGGAGGTGAACGTGCGCATCGCTCTGGAGTCCTTCTTTGGCAAGTGTCCCAAACCCAACATGCAGGACATCACTCGCATCTCGGACCAGCTGGGGCTGGAGAGAGACAAGGATAAGAGACTGGCTCTACCCTttgaggaggagggggtggcaGAGGGGCAGTACTTCGACCAGGGTCCCCCCCAGCACATGAGCACTGGGCCCCTCCACCCCGGTCAGGCATACCCCCCCGGAGTCGGTCTGCCCGCGCCCCCTCACCTCTACATGCCCTCCTTCCACAGAGCTGACGTGTACAAGCAAGCCCTGCACCCTGGGCTGACTGTGGGGCACCTGTCAGGATAG

Function

symbol description
pou5f3 Enables several functions, including DNA-binding transcription factor activity; chromatin binding activity; and protein heterodimerization activity. Involved in nucleosome organization. Acts upstream of with a positive effect on cell dedifferentiation. Acts upstream of or within several processes, including brain development; embryonic morphogenesis; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in nucleus. Is expressed in several structures, including blastoderm; blastodisc; ectoderm; gonad; and hindbrain neural keel. Human ortholog(s) of this gene implicated in embryonal carcinoma and seminoma. Orthologous to human POU5F1 (POU class 5 homeobox 1); POU5F1B (POU class 5 homeobox 1B); and POU5F2 (POU domain class 5, transcription factor 2).

NR:

description
POU domain, class 5, transcription factor 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020217 True 1308 mRNA 0.63 4 13456679 13461481

Neighbor

gene id symbol gene type direction distance location
AMCG00020218 NA coding upstream 4888 13436742 ~ 13451791 (+)
AMCG00020213 LOC102780640 coding upstream 126502 13303410 ~ 13330177 (+)
AMCG00020206 NA coding upstream 201388 13248757 ~ 13255291 (+)
AMCG00020192 NA coding upstream 641347 12802058 ~ 12815332 (+)
AMCG00020191 nrarpa,nrarp coding upstream 721466 12734875 ~ 12735213 (+)
AMCG00020225 NA coding downstream 52073 13513554 ~ 13516767 (+)
AMCG00020223 abca2 coding downstream 83930 13545411 ~ 13579175 (+)
AMCG00020222 clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903 coding downstream 121800 13583281 ~ 13585950 (+)
AMCG00020226 NA coding downstream 130615 13592096 ~ 13595451 (+)
AMCG00020228 NA coding downstream 136488 13597969 ~ 13613378 (+)
G61676 NA non-coding upstream 105145 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 107533 13348855 ~ 13349146 (+)
G61672 NA non-coding upstream 112640 13343757 ~ 13344039 (+)
G61671 NA non-coding upstream 113298 13343143 ~ 13343381 (+)
G61670 NA non-coding upstream 113666 13342680 ~ 13343013 (+)
G61774 NA non-coding downstream 134033 13595514 ~ 13596726 (+)
G61841 NA non-coding downstream 247354 13708835 ~ 13709496 (+)
G61871 LOC100846954 non-coding downstream 289606 13751087 ~ 13751363 (+)
G61904 NA non-coding downstream 415830 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 426670 13888151 ~ 13890428 (+)
G61675 NA other upstream 105967 13349677 ~ 13350712 (+)
G61491 NA other upstream 836862 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 914418 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1041728 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2156647 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 325533 13787014 ~ 13792944 (+)
G61894 NA other downstream 371689 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 401996 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 421344 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 486945 13948426 ~ 13951047 (+)

Expression


Co-expression Network