AMCG00020520


Basic Information

Item Value
gene id AMCG00020520
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23813512 ~ 23857803 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020520
ATGGTCTCTGGATTTGAGAGGCCTGTATTATTGGTCAGAGATTACTGTTGGAGGCAGAGCAGgttgaTCAAGCAGAATGGATCTAACATTAATATAGTCCCTGTCATTGCACTCATCTCAGAGAGATATAGCCAGCCAGTCAGTGTTTCTGGAgccaatCTGCTGCAGAAGAGCACCGAGCTGCACAGGTTGCAGATGGCCTGGGAGGAGGTGCAGGGACAAGAGAaggagcgggagagagagaccactGCCCTGGGCAGCCAGCTAACCCATGCCAAGGAGGAGCTACATAGCGCCACCCAGAGGTGTGTGCAGCAAGAGAGGGCTGTGCTGGAGCTGCAGGAGGAGAAGCGGAGGCTAGAAGAGCTGTGCGCCGAGCTGCGGGGGGAGGTGGAACATGCGCAGGcccagctggagagagagaacggGGCCCTGCAGAGGGAGATACACCGTAGAGAGGAAGAGACGGAGGGGCTGAAGAGGACACATGAACAACTAAAGGCCAGGATCACAGCTGTGGAGCACAAGGCTGAACTGAGCGCCGGTCGCGCCGCGGAGCTGGAGAGGCAGCTGGAGATGGTGGGCCGAGAGAGGCAGGAGAGCAGCAGCCAGAGGCACTGGGAGTGGAGGGAGCATCACCGCCAGGCTGCCGAGGAATTGGGAGAGCTGCGTGAGGAGCTGACTGAAGCCCAGCGCTCTCAAGATGTGGCCCTCAGGAGCCTCCAGCTGCAGGAGGAGAAGACCAAAAGACTGGAGGCTGAGAACTGCAGTCTCCAGGACAGGCTGAGGGAGCTGCAGGCCAGGCTGTCCCAGCGGGAGGAGAGGCTAGCAGACCTGGGTGTGGAGACATCCACTCTGAGAGTGAGGCTGCAGGCACAGATCACCGAACGCGAAATCCTCTGCCAGCAGCTGCATACCTCCCAAGATGCACTGCAGCAAATCACTGTGGAACTCAGGGCATACAGGAAAGAGGCAGAGGAGCAGATGACCCAGAGAGACAACAAGGTGGCAGAGCTGCAAGCAGAACTGACTCATCTGCAACAGCAGTATTCAACCTGCTACAACCAGCtggtgagggaggaggagagcggGGTGAGGCTGAAGACGGAGCTGTGTGAGGCCGGAGAGCAGCAGGACCGGCTGGCCTCTCAGGTGTCCGAGCTCCGCACAGAGCTGCATAGACTCCACGCTGAGCTGGGGCTGCTCACTGAGAGGCACAAGGCCACACAACAGGAGGTGTTCAGCCGGGATGACACAGTTCTGAGACTCACCACTGACCTGAAGAAGGCCGAGGAGAACCAAAGAGCTCAGCAAGGGGAGCTGGCGGCACGGATGTCTGAGGTGCAGAGCCTGACGGGGCAGGTGAGAGCCCTGCAGAGTGATGTGAACGGTCTGCAGGACAGCCTGAGCCACCAAGAGGCCGCCATGAGAGAGCAGGAGCAGAGAGCAGCCCAGCTACAGCAGGACAGGGAGCGGCTGTTCacagagAGTGCCAGTCAAGAGGGGGCGCTGCAGAAGCTGCACGTGGAGTTGCAGCGTTGCCAGGGGGAACTGAGGGAGCAGGCGGAGCGCTGCCAGGGGGAGGCGGAGGGGCTGCGCAGGGAGCAGGAGGCCTGTCACAGGGAGCTGCAGGAAACACGGGGTCGGATGCAGCACTATCGCGCCACCGTGGAGAGACTCGGCTCGGACCTGGAGCTGGCACAGGGGCTGCAGCGAGAGCTGGGGGAGGAGgtGTGTCAGTATGAGGCGCGTCAGCGTGCTCTGGACTCTGAGGTGGCTCGGCTGCGGTCAGACCTCCAGGAGGCGGAGGCAAGGGTGGTGGCTAGAGAGGGGCGTTGCCAGGCCCTGTCAGACTCTCTGGATGTGTACAAGCAGAAGTACCAGACCTGCCTGGGCAAAGTGACGGAGCTGGAGAGCACACTTCAGTCCAGAGAGGAGGACCTGAAAGAGGCCAAAACACAGGTATCAGAGCGTGAGGACGAGATCGTGAGGCTGCGGGCCAAGGCCGTGGTGCTGCGCACTGACCTGGAGTCGCATCGTGCCCAGCTGGAGACTGGAGACGAGGCCATCAGCGACCTGAGTCAGCAGCTGAGGAGCACCCAGGCAGAGCTGGAGAGAAGCCGCAAACACGGCCAGGAGTGTGAACTGGTCATCGGCTCACTGAGAGACAAGACCACAGCGCTGCATGCACAGGTGGAGGAGCAGGATGAGGGAGCAGTGACGATCCAGGCCGATTTCTCTGCATACAAAGCCACTCACATGCACTCGGACTCGGAGTATGATGCTCAACTCTTACACATCCAGGAGCTCCAACAGGAGCTGTCCTGTGCGGTGCAGCAGTGTGACCAGGGCTCCCAGCAGCTCAGTAACTGCCAGGCTGCGCTGCACCAGCTGACAGATGAGGTGCACCGGCTCACAGAGCAGAGGGCTAACAGCCTGCAAGAGGTGCTGAAGCTGGAGGAGACAGTGAGGCGGCTGCAGGGGGATGTGGCTGCGGAGGTCCAGAGGAGGGAGGCGGAGGTGGACAGGCTAGAGCACTGCGTGTCCAAACTGGAGGAGGACCTGAAGGAGGCCCAGCGACTGTGTGCTCAGAAAGAACAGGCAGACTTGGTGGAGGCCCACGGGACAATCAGGGTGCAGGCAGCTGAGGCTGAGCGGCAGGCAACGCTAGCACGAGGCCTCGAGGCCGACATCCAGAGGCTGAAACGAGAGAGACGacaaagagagagcgagagcaccGCTTTACGGGCTGAGCTGCTGCAGCTCAAAGACGAGCTAAAGGAAGCACATGCCCAACACAGGGACACCGcCCAGGAGCTGGCGCGGCAGGAGGAGAAGGTGGTGCTGGCAGAAGGGGGGCAGCAGCAGGCGCAGGAGCAGCTGGGGGAGCGTGTGGCGGAGGTGGTGCGACAGGAGCAGGCCGAGCGCAGACTACAGGCCGAGCTGCGGAGGCTGAAGGAGCAGCTGGCCAACACTGACCAGGAGATAGTGGAGTACAGGGGCCTGATGGAGCGTCTGAAGGCGGAGCTGAGAGAGAGCCGGCAGGCCCAGCACAGCGCACAGCAGGAGGGGGCCAGGCACCAGCAGGGGGCGCAACGGCTGGACAGGGAGCTGGAGAGCTGCAGAGAGCACGTCAAGACTCTGCAGAAGCAGCTCCAAGAGCAGGTGGAGGCTGGCCGGGCGCTGCGGGCAGAGCTGGCACAGGAGCAGGCGAGGCAACAGGATCAGCAGTGCCGACTGCAGAAGGCCCTGGAGAGGGAGCGGGCcctggagagggagagcgaggaGTTGAAGAGCATGTTGATGTCCACACAGCACCTGttgaaagagagagagggagagctcTCTGGCCTGCAGGAGCGCGTGTCTGAGTTCCAGAGCGCCTCCATCTGCCTGCGAGAGGAGCACACGGCCTGCCAGGCCCAGCTGCAGCTGTGCAGGAGAGAGCTGGAGACGGCCCAGAGCCACAGCCAGAGACAGAGCCAGGAGATGGGCAGGCTAGAGGAGATGGTGTCGAGGCTCAAGTCAGAGCTGGACACGGCTGAGGACAGTGAGAGGCAGGGGAGGCAGCAGGCGGCCTCCGCAGAACAGAGAGTCAGAGAGCTGAGTCTGGAGCTGACAGCTGCCCAGGCCGCACAGAAGGAGAGCATGGAGCAGCTGGGCAGCCGGAGCCGTGAGGTGGCAGCGCTGCGTGGGGAGCTGTCTCGCTCCCAGCAGCATGAGGCCCAGTTGGCCCGGGACAGCGCAGCCCAGGAGGACAGACTGACGCAGTTTGCCGCACAGCTGCAGCAACTGCGCAGCCTCAGCAGACACTCACAGGACGAGGCTCGGACCTACGAGGGCAGACTGTCGGAGCTGAACGCCCAGCTGGCACTGTCGCAGCGCTGGGGTCAAGAGCAGCTGGCAGCGCTGGAATCCAGAGAGGAGGAGACGGTGGTTCTCAAAGTTGATGCCTTACTCTCAGAGCTGGACTTAATGGAGCAGAAGTGCAAGGCGACAGCTAATGAGGTGGAAGTCCTGCGACAGTCCTTGGCAAACGCTCGCTCAGATAGCTCCCGTCTGCACCGAGAGAGCGAGCTGGTCGTGTCCAACGTCAACCACTGGGTGAAGGAGCAGAAGGAAGCCAACGAAAAACTAGGCAACAAGATTAAGGAGCAGAGTAAGCAGATAGTCCATCTAATGGCTGAGAAAGATCACCTACAAGAGACTATGGAGGCCCTGCAGAGAGAAAACAGGAAGCTGAAGGCTGAGGTGGATGAGAGGAGGATTGAGCTGGAGAGGTTCAGGGCCCTACAAGCCACTCAGTCAGACCAGCGGAGTGCCTTGACACACTTACGTAGCCAACTTGACTCAGCCAGTTATATAAAAGCACATGGCGCTTCTGGGACCGCGCGCAGAGTGAGCCGTGCGCTGCTGTGCTGTGgctctgcgtgtgtgtgtgagcgctgCGCTCTTAGTGCGTTCGGGGAGGCCGATCCACTCTGTCCAGTCACGCAGCACTTAAGCCTGTCTTGTTCCCCCCCGTTTCTTCTCTTTCACTGTGTGGTAGAGAAGAGCTGCAGGGTTGGTTGGGAGCACAGGAGCTCAGTGAGAATGAAAGCAGAGATAGGACTGGTCCTTCTCAACATTAGTCGGTTTTCTCATGTCCTCAGGCCTTCCCACGTCCCGAGAGGTGCCATTCATAGCCAAGGAAacctgaagaagaagaagacacTCCTGGCGGCCAACCTGAGCTGA

Function

GO: NA

KEGG:

id description
K23223 PMFBP1; polyamine-modulated factor 1-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020520 True 4737 mRNA 0.61 33 23813512 23857803

Neighbor

gene id symbol gene type direction distance location
AMCG00020517 zfhx3 coding upstream 131210 23657711 ~ 23682302 (+)
AMCG00020519 zfhx3,LOC105888974,LOC106533552 coding upstream 202366 23608590 ~ 23611146 (+)
AMCG00020518 zfhx3 coding upstream 230772 23575106 ~ 23582740 (+)
AMCG00020515 NA coding upstream 581204 23214389 ~ 23232308 (+)
AMCG00020513 usp10 coding upstream 608220 23171800 ~ 23205292 (+)
AMCG00020522 NA coding downstream 67377 23925180 ~ 23971574 (+)
AMCG00020528 NA coding downstream 199291 24057094 ~ 24062675 (+)
AMCG00020530 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 302474 24160277 ~ 24163714 (+)
AMCG00020535 NA coding downstream 344511 24202314 ~ 24210374 (+)
AMCG00020536 NA coding downstream 358268 24216071 ~ 24225069 (+)
G63789 NA non-coding upstream 726579 23086378 ~ 23086933 (+)
G63787 NA non-coding upstream 736199 23076901 ~ 23077313 (+)
G63784 NA non-coding upstream 743363 23068311 ~ 23070149 (+)
G63772 NA non-coding upstream 839421 22973878 ~ 22974091 (+)
G63592 NA non-coding upstream 1422271 22383517 ~ 22391241 (+)
G63898 LOC108433019,LOC103398424 non-coding downstream 40704 23898507 ~ 23899754 (+)
G63947 NA non-coding downstream 212913 24070716 ~ 24072160 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding downstream 217246 24075049 ~ 24076475 (+)
G63951 NA non-coding downstream 230711 24088514 ~ 24093237 (+)
G64009 NA non-coding downstream 374936 24232739 ~ 24242677 (+)
G63786 znf821,LOC107747380 other upstream 738567 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 751363 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1404019 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 1671314 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 4177291 19631325 ~ 19636221 (+)
AMCG00020529 LOC107090538 other downstream 175234 24033037 ~ 24068457 (+)
G63939 NA other downstream 194186 24051989 ~ 24055592 (+)
G64046 NA other downstream 621032 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 1204570 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 1220339 25078142 ~ 25084873 (+)

Expression


Co-expression Network