AMCG00020592 (polr2c)


Basic Information

Item Value
gene id AMCG00020592
gene name polr2c
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25325793 ~ 25329845 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020592
ATGCCGTATGCCAACCAGCCTACGGTGAAAATTACTGAACTTACAGACGAGAATGTGAAGTTTGTCATAGAGAACACGGATCTGGCGGTGGCGAACTCCATTCGGCGAGTGTTCATGTCCGAAGTCCCCACGATAGCTATCGATTGGGTTCAGATTGATGCCAATTCCTCTGTCCTCCATGATGAATTCATTGCTCACAGAGTGGgtcTGATTCCACTAACAAGTGATGACATTGTGGACAAGATGCAGTACTCCAGGGACTGTACGTGTGATGAGTTCTGCCCAGAGTGCTCTGTGGAGCTGACCCTGGATGTGCGCTGTACAGAGGACCAGACCCGGCACGTCACATCCCGGGACCTTCTCTCTAATAACCCCCGCGTCATTCCGGTAACATCACGGAACCGTGATAATGACCCTAATGACTATGTTGAGCAGGACGATATCTTGCTGGTGAAGTTGAGGAAAGGCCAGGAGCTGCGTCTCCGAGCCTATGCCAAGAAGGGCTTCGGGAAGGAGCACGCCAAGTGGAACCCCACAGCGGGGGTGTCCTTTGAATACGACCCCGACAatgcactgagacacacagtcTTCCCCCGACCAGAGGAATGGCCTAAAAGTGAGTACTCTGAGATCGATGAGGACGAGGTGCAGGCTCCCTATGACCCCAATGGCAAACCGGAGAGGTTCTTCTACAACGTGGAGTCGTGTGGATCCCTGCGGCCTGAGACCATTGTCATGTCTGCCCTGGCCGTCCTGAAGAAGAAGCTCAGTGACCTGCAAACCCAGCTGAGCCATGAAATCCAGAGTGATGTCCTCACCATCAACTGA

Function

symbol description
polr2c Predicted to enable protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2C (RNA polymerase II subunit C).

NR:

description
DNA-directed RNA polymerase II subunit RPB3

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020592 True 828 mRNA 0.53 9 25325793 25329845

Neighbor

gene id symbol gene type direction distance location
AMCG00020574 NA coding downstream 324665 24972749 ~ 25001128 (-)
AMCG00020575 NA coding downstream 374920 24947221 ~ 24950873 (-)
AMCG00020566 znrf1,LOC106573647 coding downstream 479365 24843010 ~ 24846428 (-)
AMCG00020564 NA coding downstream 504732 24814766 ~ 24821061 (-)
AMCG00020565 NA coding downstream 525010 24791942 ~ 24800783 (-)
AMCG00020591 LOC102778684,LOC107573013 coding upstream 1228 25331073 ~ 25348318 (-)
AMCG00020594 gabarapl2,LOC107560072 coding upstream 143410 25473255 ~ 25479762 (-)
AMCG00020597 NA coding upstream 221745 25551590 ~ 25552969 (-)
AMCG00020595 chmp1a,LOC106573671 coding upstream 235738 25565583 ~ 25574610 (-)
AMCG00020601 NA coding upstream 260169 25590014 ~ 25595268 (-)
G64274 NA non-coding downstream 61558 25261926 ~ 25264235 (-)
G64258 NA non-coding downstream 109100 25203124 ~ 25216693 (-)
G64238 NA non-coding downstream 224706 25100037 ~ 25101087 (-)
G64235 NA non-coding downstream 231467 25094031 ~ 25094326 (-)
G64221 NA non-coding downstream 261451 25064136 ~ 25064342 (-)
G64340 NA non-coding upstream 131582 25461427 ~ 25461642 (-)
G64341 NA non-coding upstream 133695 25463540 ~ 25464116 (-)
G64342 NA non-coding upstream 135032 25464877 ~ 25465350 (-)
G64412 NA non-coding upstream 310725 25640570 ~ 25643373 (-)
G64418 NA non-coding upstream 361563 25691408 ~ 25779211 (-)
AMCG00020590 LOC108250636 other downstream 22812 25289502 ~ 25302981 (-)
AMCG00020589 NA other downstream 41584 25272593 ~ 25284209 (-)
G64271 NA other downstream 83282 25242169 ~ 25242511 (-)
G64260 NA other downstream 114730 25209059 ~ 25211063 (-)
G64247 NA other downstream 186408 25121098 ~ 25139385 (-)
G64298 NA other upstream 239 25330084 ~ 25330570 (-)
AMCG00020604 NA other upstream 357430 25687275 ~ 25715457 (-)
AMCG00020614 NA other upstream 556205 25886050 ~ 25905598 (-)
G64470 NA other upstream 568583 25898428 ~ 25918630 (-)
AMCG00020613 NA other upstream 605056 25934901 ~ 25948343 (-)

Expression


Co-expression Network