AMCG00020598 (znf276,zgc:158366)


Basic Information

Item Value
gene id AMCG00020598
gene name znf276,zgc:158366
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25681616 ~ 25687176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020598
aaaataaataaatacacaacagcCTACTTTTACCAAATAAAAAcgtcattttaaaaatactttttaaaagtccAGGAGCACTGTTTTCCTGTCCCACACTCATGTTAGaggagttttatttttcttatcgCTGCTAGTAAAAGTGGGCATGAAGCGGGACCGGCGCGGTCGGCCGGTGGCTGCGTCTCAGCAGACCCGGACAGGACAGCCAGCCGCGGGGAGCAAGCGACCTGGCCGACGCGGGAGACCGAGGTCAGCGGCCAGGAAGGATGTATCCGGGGATCGGAGCGAAGGCAGCTGCAGCGGGCCGGAGGAGAGCTGTGCTGCAGGGCAGCAGAGCAGGGACGGGCTCGCCGCTTCAGATGTGGGAGTAGGTGGTGCTGAAGGCGGATCAGAGCAGTCGGGCTCAGGGAGACTCAGCACAGCATTCTGCCGTCTGTGCCATGGGAAATTCTCACCGCGGAGCCTGAGGCATGCCTTTGGGAAGCTCCCGGCAGAGCTAGGGCGGGGGCCAGGTGTCGACAGGAGGCCCCGGACACCCCAGCTGTTCTTCGCCGATTTCCAAAGGCTGGTGGGAGTGCCGGTGACCCAGGACCCCCTGCTGTCCCAGTTTGTGTGCAAGAACTGCCACAACCAGTTCTACAAATGTCACAGCATCCTGCGTACATTCGTACAGCGTGTCAACCTCTCACCCTCTGTGAAAGCCAAGGCAAAGAACAGTGGAAATTCCGTGTCTTCACATTCAACTGTAGAAACTTCTGCGATCAATCAAGTGATCACGTCCAGCCCGCAGTGTCTGTACAGTCTGGTATCTTGGACACACCAGCACGCGGGGGGGTGCCAGTCATGCCCAGGGCTGCGGGAGGTGTTGGCGGGGGAGTACTGTGGAGCCGTGCGGGCCGTGTGGAGCTGTGTGGATGGGCACCGCTACATCATGGACACGGCCTCAGACCGCACCTCCGTGACGCTGGACCTGGCCACAGAACCAGTGAGCCTGGGGGAGCGGGCGGAGGGCACAGGGAAACCTGCCTCGGCGAACCCTGTCCCAGAACATGGCCCGCCACCGCTGAACACTAGCACAGGGCCCAGGGGTAACAGCAACTCCCAGCCCGCTGGCCCAGTTGCAGCTCCACACACCCAGGACATCCCTGTACACCATCCACAGAGTGACAAGAGCACTCCGGAAACTGCCTGCCTCAACAGCACTGCAGGTCAGCTTGGCAGTGAGAAGCCCATTGCAGTGCCAGCAGAGCCACTGGATGGGGTAGAGGACAGCGATCTATCCGACAGGGAGTCCTTGAGCGAGGATGAAGATGAAGACAAGGGGAAGAGTGGTTCATCCGATGAGCTGTTTGAGCCCTATCCAGAGAAAAACAGAATGTCACCTAAAAAGAATGAGAGCAAAGAAGCCAAGAAGAAGATGGAACCAAAAGTGAGGAAAAAGCCCGGGCCCAAGCCAGGCTGGAAGAAGAAGATCAAGACTGAACGAGAAGAGCTGCCTACTATCTATAAATGCCCTCACCAAGGCTGCATCGCTGTCTACCGGGGGGCTGACGGCATGAAAAAACACATCAAAGAACACCACGAAGAGGTGCGAGAGAGGCCCTGTCCACACCCAGGCTGTAATAAAGTCTTCATGATTGACCGATACCTGCAGCGCCACGTAAAGCTTATTCACACAGAGGTGCGGAACTACATCTGTGATCAATGTGGCCAGACTTTCAAACAGCGGAAACACCTCTCTGTCCATCAGATGCGGCATTCGGGGGCAAAGCCTTTGCAGTGCGAGGTGTGTGGCTTCCAGTGTCGGCAGAGGGCCTCTCTGAAGTACCACATGACCAAACACAAGGCTGAGGCGGAGCTGGAGTTCGCCTGTGACATGTGTGGGAAGCGCTTTGAGAAGGCCCACAACCTCAACGTGCACATGTCCATGGTGCACCCCCTCACACAGAACACTGACAAGAGCAAGGCCTACAGGGAGCCCATCGGCTTCGTGCCTTCACAGAACCCCCCAGTGTTGGAGACCATCTCGGACAGTCTAGCCCAGTCACTCATCCAGACGAACACCAGCTGAGACGCGAGCCTGGGAGCTCCTGCTGCACTTTGGTAGAAGATGCAATAAAAGCCTAGACTCCAGCTACCGGTTTCCAAAAGAGCCACAGTACTACTACCGCATGAAGATGCATCGAATCAGTTTCTAAAAAGGCCTGACTTCCTGTTCCGAGAGAATGCTGTAGAGTACAAACCGCAGTGTACGGGTGAGAGATTAAGGGAAACTGCTCCTTAAAGGCGACGCACAGTTCCAGCCCACATGTCCACTGATGACTAGGATTAGCTGATAGTGAAACATGTTTAAGTGCTGCCTCAGTTTTTATATCACTTAGTATTTTTACAGTGACTTTGTTCTACAAGCAGgattacattacaaacaaaactaCTGTTTCTTTATGAATGGCAATTCATATCTTGAGGTTTAATACTTCATACCTATTTCAGGACAGTTCAAATACACACTACTACAAAAATAGGAATGCAAATGAGAAATCAGTCAGGTTTTAATTCACTAATGGATCCTGTGCTCTAGTATATCTTGCAATAtgactgcatttgtgtgtgtatgtctgtctgtctatatata

Function

symbol description
znf276 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in kinetochore.

NR:

description
PREDICTED: zinc finger protein 276 isoform X2

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020598 True 2638 mRNA 0.53 11 25681616 25687176

Neighbor

gene id symbol gene type direction distance location
AMCG00020599 NA coding upstream 71226 25601120 ~ 25610390 (+)
AMCG00020600 cdk10 coding upstream 92865 25579705 ~ 25588751 (+)
AMCG00020596 NA coding upstream 149253 25531176 ~ 25532363 (+)
AMCG00020593 NA coding upstream 189321 25487947 ~ 25492295 (+)
AMCG00020586 wwp2,LOC107740243,LOC108439047 coding upstream 223521 25405634 ~ 25458095 (+)
AMCG00020609 snta1,LOC107560074,LOC107728410,LOC107667670,LOC107744389 coding downstream 94872 25782048 ~ 25783248 (+)
AMCG00020608 sntb2,LOC106573669,LOC106560900 coding downstream 122990 25810166 ~ 25811675 (+)
AMCG00020606 sntb2 coding downstream 152528 25839704 ~ 25854564 (+)
AMCG00020607 vps4a,LOC106939979 coding downstream 167912 25855088 ~ 25861732 (+)
AMCG00020616 NA coding downstream 190079 25877255 ~ 25885079 (+)
G64394 NA non-coding upstream 38242 25640593 ~ 25643374 (+)
G64378 NA non-coding upstream 109854 25569390 ~ 25571762 (+)
G64362 NA non-coding upstream 145569 25535753 ~ 25536047 (+)
G64300 NA non-coding upstream 347934 25332259 ~ 25333682 (+)
G64297 NA non-coding upstream 351058 25330081 ~ 25330558 (+)
G64406 NA non-coding downstream 34757 25721933 ~ 25728334 (+)
G64436 NA non-coding downstream 132215 25819391 ~ 25819782 (+)
G64457 NA non-coding downstream 206974 25894150 ~ 25895525 (+)
G64478 NA non-coding downstream 247729 25934905 ~ 25940113 (+)
G64555 NA non-coding downstream 508037 26195213 ~ 26197405 (+)
G64372 NA other upstream 128296 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 208730 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 596743 25078142 ~ 25084873 (+)
AMCG00020572 NA other upstream 604926 25062373 ~ 25076690 (+)
G64046 NA other upstream 1199502 24478835 ~ 24482114 (+)
AMCG00020603 NA other downstream 74959 25762135 ~ 25778982 (+)
AMCG00020621 LOC105904655 other downstream 368111 26055287 ~ 26096957 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1728820 27415996 ~ 27418520 (+)
G64887 NA other downstream 3186454 28873630 ~ 28874072 (+)
G64908 NA other downstream 3321487 29008663 ~ 29009601 (+)

Expression


Co-expression Network