AMCG00020603


Basic Information

Item Value
gene id AMCG00020603
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25762135 ~ 25778982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020603
ATGTTGTTACATCCGAAGTGCGACCATTTGCGATTATTAGCAGTGAGGCCTCCTCTTGTTGACTTCTACCTCCTGGTTTCCTTCTCCCGCAAGGTGGTGCAGTCCCTTGGCTTCGCTATCTACCGGGCTCTGGACTGGGGACTGGACGAGAGTGAGGAGCGAGAGCTGAGTCCCCAGCTGGAGCGTCTCATTGAGCTGATGGCAGGGGGGGAAAGTGAgggcggcagcagcagcggcaCCGCAGACGAGGGCTACAGCggccaggaggaggaggaggaggcagaggggcCGCGCCGCGCAGTGCGCACCTTCCACCAGGTGATGGCGGTGTGTGCCGCCCGCCTCGCCAACCCCTCCCAGGCCCAGGAGCACTACCAGGCTGTCAGCAGGGCCCTCTTTGTGGAGACATTGGAGCTGCAGACCTTCCTGTTCAAAATCAGAGATGCCAAGGAGATGCTTAAGAAAATCCGAGCTGAAGAGAAGCCTGAAGAAAGACCCACGGATGAGCTGGACAACCTGCGCCACACCGACTGGGCCCGCCTTTGGGTCCAGCTGATGAGAGACCTCCGCCATGGCGTGAAGCTAAAGAAAGTGCAGGAGCAGCAGTTTGACCCACTGCCCACCGAGTTTCGCCTCACGCCCTTCGAGATGCTCATGCAGGACATCCGAGCTCGCAACTACAAGCTGCGCAAAGTCAtgGTTGACGGTACCATTACAACTCGAGTGAAGAAAGACGCCCACGAGCTGATCCTTGATTTCATCCGGTCACGACCACCACTGAAACCTGCTTCTGAGCGCAGCCTGAGGCCCCTGCCTGAGAAGCAACACACCCTTCATGAGAGGATACTCGCTGAAATCCGTCAGGAGAGGAAGCTGAAGCCAGTGGAGCCCATTTGCCGAGGAAGATCGTTCGGCTCGCTGCCCTGTCTGGTCCATGCCTGCTCCTGCACTGTGAAGTCCACATCCTGCATCAACCTCTCCATCTCTGAAGGGGCCAGCCGCCCTGCACCTCAGCGACCAAGAATCCTGCTCAAAGCCCCCACATTGGCCGAAATGGAAGAGATGAATATATCAGAGGAGGAGGAGTCGCCCAGCGGGGAGATGAGGAGGGTGGAGAGCTCTCCAGTGCCTCTGAAGAGGGACCGCTCGTTCTCGGAGCACGACATCGCTATGCTGCAGAGCGAGATGACGCTGTCCCACTCTGATCTGTGCCACACAGTACTGATACGGTCTCTACCTGCCCGGGGGCGTCCGAGTTACTCCCCGGGGACGTTCTCTCCGGGCCGAAGCTCCCTCAGCTCTGTTGAAGAGAGGACTGAGGCTGATGGCAGCTCCCCTTTGAGACAGGGCTCCAAACATCAATGGATGGAGGAGTTCAGCCACCCAGTGGAGAGCCTCGCCCTCACCATTGAGGAGGTCATCAATGTGCGAAAGGTTCTGGTCAAGGCCGAGATGGAGAAGAGGACACCCCATAATGGTCTCTcgtgtccctctccctcccccaggtCCCTGCGCAGCCTCACGCGGCGCTCTGTGGAGGAGGAGTTCCCTCACCTCTATGCCAATGGCTGCAGCCTGAAGGACATCTGCTCTGAATGCACCAAGTTTGTGGGCGACGTCATCACCTCGAGCCGCAAGAGCCTGGACATCCTGAACAACACGCCCAAAAAAGCCCAGTCAGTCCGGGCACCCCCAGGGAGGAGTGCCAAGTACAAATAA
>TU80576
AGAAGCCGGCCCACATCCCTGTGTACACCGTGGGCTtcgagagcagcagcagcagcagcaacgcCCGGAAAAGCGAAGTCTTTCAgtCCCTGCGCAGCCTCACGCGGCGCTCTGTGGAGGAGGAGTTCCCTCACCTCTATGCCAATGGCTGCAGCCTGAAGGACATCTGCTCTGAATGCACCAAGTTTGTGGGCGACGTCATCACCTCGAGCCGCAAGAGCCTGGACATCCTGAACAACACGCCCAAAAAAGCCCAGTCAGTCCGGGCACCCCCAGGGAGGAGTGCCAAGTACAAATAAACCTCTGCCTTTTTCGCTTCACCCGCCAAACCCCACTCCCCTCCTCCTTAATAAAGGAAACCCAACAAAACAATTGTGTACAGAATCAAACCTCAGTGTTTCTCTGTTGGCATGACATGACTTCCAGTATTGCCCCACTTCCGGATTTCTCTGCGTAATATTTACGGCTGTTATCTGCACAAGTTCCCGCTCCTCGGATGAGATCCCTTTCTCCCAGATGCCCtgattattgttaattttttttgtgtggaaagcTTCTTGATTTGATTTTACCACAATAAAAGGAANNNNNNNNNNAAAAAAAAGACTAAAGGTTTTCTGGGGAAACACTTTGCTGGGGATGTATCGGAGTCTGCCTTACCTGAATAAGTGCTGCTTACGTTACAAGAGGATGAGCCAAAGGGAATACTGTGGGAATAATGTGGGCATCACACCACTGACAAAGAGCACAGGCATGAAGGGGAGAAAATGACTGGACCATTTGGGCCTTAAAGGCAGAAGAGGACTTCCCTCacagttcattttattattatttttattattattattttgcacacCAAATGCACCGGCCATAAAGAAAGGTGAATTGAaggcttttctctctctgtctctctctctctctgtctttgatCTGGAGGATGTATCATCCAAGTTCTACATTGTTTACTCACAGATGCTAGTCTCCCGCCCAGTCTGGGAGTTAATTTAGACACTCTCAGCGACTCACCCCCACCTGCTTCAGAGGAAAAGGATATTTACTAAGAAATAccacaacaaaagaaacaaacagactcAACAATGCTGGCAGGGCAGCACTATTCCCTCGACGCTTTACAGAAAGCCAAATATTGCTGCACTGCTAGGGTTCCAGACAATACTAATGGCTGCTTTGCTGTGATTaaattctgcaaaacaaatgtgaaccAGAAACAAAATATCCAGATGCTCTTtggcttatttgtttttcttagtttttattCTGTCACGGAGTGCTTCTTTCAATCCACAGTAAAGGACAGTTGTGTCTTAACTCTGTATGTGAGGAAAATGAATCTTATATCTGCTCTTATTTTGGTCAGAACACAATGTACCAAAAACCAAACAATCGATCTCAACTGAGATTGTGGATTACAGAATGTAAGAATAGGTATTTAACTGGCTGACTCTGTTTTAATGTCAGCCTTTATTTTGCAACCTTGGCTGTTctaatttattcataattttggATCACTGTTCCTTTCCGCGGGTGGATGTGGCTTTCCGAGTCTGTGGTCAGGTGTTGTGTGTGGCTCTTTTCCACTGCAAGGGCTAGAGATCGCCGTGCTTTTGGGAAAGTGCACCAGGCTttttcagtgtgtcagagtCTGCTTGGCTGGCTTCAGAAATATGATGGTGCCAagaccttttttttcctctctctctctctctgaaaggACCTTGTAAACATTCAATAAATCTACGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020603 False 1719 mRNA 0.59 11 25762135 25777517
TU80576 True 1764 lncRNA 0.45 2 25776407 25778982

Neighbor

gene id symbol gene type direction distance location
AMCG00020598 znf276,zgc:158366 coding upstream 74959 25681616 ~ 25687176 (+)
AMCG00020599 NA coding upstream 151745 25601120 ~ 25610390 (+)
AMCG00020600 cdk10 coding upstream 173384 25579705 ~ 25588751 (+)
AMCG00020596 NA coding upstream 229772 25531176 ~ 25532363 (+)
AMCG00020593 NA coding upstream 269840 25487947 ~ 25492295 (+)
AMCG00020609 snta1,LOC107560074,LOC107728410,LOC107667670,LOC107744389 coding downstream 3066 25782048 ~ 25783248 (+)
AMCG00020608 sntb2,LOC106573669,LOC106560900 coding downstream 31184 25810166 ~ 25811675 (+)
AMCG00020606 sntb2 coding downstream 60722 25839704 ~ 25854564 (+)
AMCG00020607 vps4a,LOC106939979 coding downstream 76106 25855088 ~ 25861732 (+)
AMCG00020616 NA coding downstream 98273 25877255 ~ 25885079 (+)
G64406 NA non-coding upstream 33801 25721933 ~ 25728334 (+)
G64394 NA non-coding upstream 118761 25640593 ~ 25643374 (+)
G64378 NA non-coding upstream 190373 25569390 ~ 25571762 (+)
G64362 NA non-coding upstream 226088 25535753 ~ 25536047 (+)
G64300 NA non-coding upstream 428453 25332259 ~ 25333682 (+)
G64436 NA non-coding downstream 40409 25819391 ~ 25819782 (+)
G64457 NA non-coding downstream 115168 25894150 ~ 25895525 (+)
G64478 NA non-coding downstream 155923 25934905 ~ 25940113 (+)
G64555 NA non-coding downstream 416231 26195213 ~ 26197405 (+)
G64556 NA non-coding downstream 422082 26201064 ~ 26202040 (+)
G64372 NA other upstream 208815 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 289249 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 677262 25078142 ~ 25084873 (+)
AMCG00020572 NA other upstream 685445 25062373 ~ 25076690 (+)
G64046 NA other upstream 1280021 24478835 ~ 24482114 (+)
AMCG00020621 LOC105904655 other downstream 276305 26055287 ~ 26096957 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1637014 27415996 ~ 27418520 (+)
G64887 NA other downstream 3094648 28873630 ~ 28874072 (+)
G64908 NA other downstream 3229681 29008663 ~ 29009601 (+)
G64979 NA other downstream 3685582 29464564 ~ 29465712 (+)

Expression


Co-expression Network