AMCG00020607 (vps4a,LOC106939979)


Basic Information

Item Value
gene id AMCG00020607
gene name vps4a,LOC106939979
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25855088 ~ 25861732 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020607
ATTTAGGTTTGCTCTTCTATTTGAATGTCTATGGTGGCATCCGTTTCCTCCATTTTCATCGTATATCCCAGTCCCTGTTGTTTATTATCGGTTTTACTGCAAAGCCCCGGAGGATTTACGAACTACAAACACAAAAGGACAAATCTGTCACCGCTTTCTCGTTGGGGATCCGTTAGTTGACGATTGGATGATTCCCTGTTGAGGAGTGAGATGAAATGACAACGTCAACATTACAGAAAGCGATTGACCTTGTGACCAAAGCCACAGAAGAAGACAAGGCCAAGAACTATGAAGAGGCGCTGAGGCTGTACCAGCATGCGGTGGAGTATTTCTTACACGCCATCAAATATGAGGCGCACAGCGATAAGGCGAAAGAGAGCATCCGGGGGAAATGTGTGCAGTACCTGGACCGAGCCGAGAAGCTGAAGGActatctgaaaaacaaagataaGCAGGGGAAGAAGCCGGTGAAGGAGATGCAAAATGACAAAGGGAGTGACAGTGACAGCGAGGGGGAGAACCCAGAGAGGAAGAAGCTCCAAGAGCAGCTCATGGGTGCGATTGTCATGGAAAAGCCCAACGTGCGGTGGAATGACGTGGCTGGACTGGAGGGAGCGAAGGAGGCTCTGAAAGAAGCCGTCATCCTACCCATCAAATTCCCACACTTATTTACAGGCAAGCGCACTCCCTGGCGTGGGATTTTGCTCTTCGGTCCTCCTGGCACAGGCAAGTCCTACCTGGCCAAGGCTGTAGCCACCGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCCTCAGACCTCATGTCCAAGTGGCTGGGAGAGAGTGAGAAGCTCGTGAAGAACCTCTTCGACCTGGCTCGGCAGCATAAGCCTTCCATCATCTTCATCGACGAGGTGGATTCCCTGTGCGGCTCGAGGAACGAGAATGAAAGTGAAGCGGCCAGAAGGATAAAAACAGAGTTTCTAGTGCAAATGCAAGGTGTGGGCAATAATAACGATGGGATCCTGGTCCTTGGAGCTACGAATATCCCTTGGGTGCTGGATGCTGCCATCAGGAGGAGGTTTGAGAAGCGCATCTACATCCCCCTGCCAGAGGAGCCGGCCCGAGCCCAGATGTTCCGGCTGCACCTGGGGAACACGCCGCACAGCCTGTCCGACACAGACATCCGGGAGCTGGCCAAGAAGACGGACGGCTACTCCGGCGCCGACATCAGCGTCATTGTCCGCGACGCGCTCATGCAGCCCGTGCGCAAGGTCCAGTCCGCCACGCACTTCAAGAAGTTTCGCGGTCCTTCCCGGACGAATGCCAACGTGATCGTGGACGACCTGCTGACCCCTTGCTCCCCTGGCGACCCCGACGCCATAGAGATGACCTGGATGGAGGTCCCTAGTGACAAACTGCTGGAGCCCATCGTCTGCATGTCGGACATGCTGAGGTCCCTGGCGACCACAAGACCCACCGTCAATGCCGAAGACCTCCTGAAAGTCAGGAAGTTCAGTGAGGACTTTGGCCAGGAGGGTTGAAGACACGTGCTTGGTACAGGGACGTCGAATCAAAAGCtaaaacaaactccccagcaccGCCACCACAAACGCCACTACTGTTGCTCCGCCTGCTATTACTCCGCCTAATCAAGTTGGCTGACTTCACAAACTCAGACGGgcatgaaaaaggaaaaaggaattgtatttatttattttgacttgaCAGTGTCTGAATCTAGAAGGCTGTTTCacaatccatttatttttatttttatggggGTAGATGAAGGAGGctccagtaaaacaaaaaagtgtatgtgtatatatatatat

Function

symbol description
vps4a Predicted to enable ATP hydrolysis activity. Predicted to be involved in endosomal transport and vacuole organization. Predicted to act upstream of or within cell division. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Orthologous to human VPS4A (vacuolar protein sorting 4 homolog A).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020607 True 1820 mRNA 0.52 11 25855088 25861732

Neighbor

gene id symbol gene type direction distance location
AMCG00020606 sntb2 coding upstream 524 25839704 ~ 25854564 (+)
AMCG00020608 sntb2,LOC106573669,LOC106560900 coding upstream 43413 25810166 ~ 25811675 (+)
AMCG00020609 snta1,LOC107560074,LOC107728410,LOC107667670,LOC107744389 coding upstream 71840 25782048 ~ 25783248 (+)
AMCG00020598 znf276,zgc:158366 coding upstream 167912 25681616 ~ 25687176 (+)
AMCG00020599 NA coding upstream 244698 25601120 ~ 25610390 (+)
AMCG00020616 NA coding downstream 15523 25877255 ~ 25885079 (+)
AMCG00020611 NA coding downstream 58907 25920639 ~ 25932142 (+)
AMCG00020610 cotl1,LOC107684658,LOC107587015,LOC107559813,LOC107722478,LOC107738394 coding downstream 110801 25972533 ~ 25989687 (+)
AMCG00020617 NA coding downstream 155159 26016891 ~ 26029449 (+)
AMCG00020624 NA coding downstream 358898 26220630 ~ 26230564 (+)
G64436 NA non-coding upstream 35306 25819391 ~ 25819782 (+)
G64406 NA non-coding upstream 126754 25721933 ~ 25728334 (+)
G64394 NA non-coding upstream 211714 25640593 ~ 25643374 (+)
G64378 NA non-coding upstream 283326 25569390 ~ 25571762 (+)
G64362 NA non-coding upstream 319041 25535753 ~ 25536047 (+)
G64457 NA non-coding downstream 32418 25894150 ~ 25895525 (+)
G64478 NA non-coding downstream 73173 25934905 ~ 25940113 (+)
G64555 NA non-coding downstream 333481 26195213 ~ 26197405 (+)
G64556 NA non-coding downstream 339332 26201064 ~ 26202040 (+)
G64557 NA non-coding downstream 345852 26207584 ~ 26207838 (+)
AMCG00020603 NA other upstream 76106 25762135 ~ 25778982 (+)
G64372 NA other upstream 301768 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 382202 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 770215 25078142 ~ 25084873 (+)
AMCG00020572 NA other upstream 778398 25062373 ~ 25076690 (+)
AMCG00020621 LOC105904655 other downstream 193555 26055287 ~ 26096957 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1554264 27415996 ~ 27418520 (+)
G64887 NA other downstream 3011898 28873630 ~ 28874072 (+)
G64908 NA other downstream 3146931 29008663 ~ 29009601 (+)
G64979 NA other downstream 3602832 29464564 ~ 29465712 (+)

Expression


Co-expression Network