AMCG00020621 (LOC105904655)


Basic Information

Item Value
gene id AMCG00020621
gene name LOC105904655
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26055287 ~ 26096957 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020621
AAACAGCTGTAACAGCCCACGTTTGTCGGATGAGATGTAACATCCAGGTCCTGATTAGCGGAGATCACAGTTCACATGAAATGGTAAGCATGGTCTTCTGTCTGAAAGTCATGTCCTCTTCTAGTTAATAGTTTTTCAGCTCGACACACTCATATATACCGATAGCAATTATAACAGGTAAGGCGTTCAGGTAGACTAGAAAACATgcccaaataaaaacatccacatTGGAGAACACTAGCTAGCAATATATGTTACTTTTCTTCCCAGAAGCACTTGTCCAGCTCCTTTTGTCATAGtacattgtgttttgcactCAAGAAAGTGACATGCAATACCGATACATAGTAGAAAGGATATTAAAACAGAATGAAGTCTTTTCTTTCAGATACTTTTCCGCACAGCAGTCCAGCAGGCTGGTTCGTGTCGCTGTTCAGGTGTCGCTCACCTCTAGCATGATGGCGGGGTTGCTGGATGTCAGCACGATGACAGAGTATCAGAGGAGCTGGATAAAGCGAGAGCTGGAGATGGGGTTTGTGATGACGGTCTTCAGGCAGAGAATGGAGAGGCTCACAGTGCAGGTCATCATGGAGACGCGACAGGTAGCCTGGACCAGGACCGCAGACCGGAACGAAGGAGTCTTGGACGTGCATGAGATAAGAGAAGTGAGGCAAGGGAAAAACTCGAAAGATTTCGAGCGGTTTAAGGATAAAAACCTTGATGAAAAAACCTGCTTCACCATTTTCTACggctctctgtttgtcctgaaCACCCTGAGTCTGAGCGTGGACACAGAGGAGGACGCCCAGAAGTGGCTAATTGGTTTGGAGCTCCTGAGACAGGAGAGCCTTGTAGCTCCTACACCACAGAGAGTTGAAAGCTGGTTGAGGAAGCAGATGTATTCAGTAGATCAAGCAAAGAAGAACAGACTCACAATGAAGGAATTGAAGTCATTGTTGCCATCATTGAACTACAAAGTCCCCAACGCCAAGTTCCTGAAGGACAGGTTTTCGGAAGTTGGAGCACGCAAAGATGTCCTTGACTTTGAGCAGTTTCATAAGTTCTACAACGTTATGATGTTTCATAATCAGAAAACTGTACTGGAAGAGTTCAAGAAGGAGTCATGTGCATTCATTATGGGAAACACAGACAAGCCAGATGGGTCTGCAGTTCTTCTGTATGATTTCCAGAGATTTCTCCTCTACCAGCAGAAGGAGACATGGGCCAATGATCTGAATATGGTAAGGGAGCTGATGACCACCTTCATTGATGACACCATGAGGAAGACCAATGACCCGGAGTTCAAAGTTAGCGAGTTTCTGAACTACCTGTTCTCAAAGGAAAACTCAATATGGGATGAAAAATGTTCAGAAATCTGTACCCTGGACATGAACAACCCCCTGTCTCACTACTGGATCAACTCATCTCACAACACGTACCTCACAGGAGACCAGCTCCGAAGTGAATCTTCCACAGAAGCGTACGTCAGGTGTCTAAGGATGGGGTGTCGATGCATCGAATTGGACTGCTGGGACGGCCCTACAGAGCCCATTATTTACCATGGATGGACACGAACCTCTAAAATCAAATTTGAAGATGTTGTGAAGTCTATCAACGACCACGCATTTGTCACATCAGAGTACCCGTTGATTTTATCCATCGAGGAACACTGCTGTGTCGATCAGCAGCGGCAAATGGCCAAGATTTTCCGGGATGTTTTCAAGGATAAATTACTGACTGAGCCGATTGAACTGATTGCTGACCAGCTACCTTCCCCGACACAGCTCAAAGGCAAAATCATCATCAAGCATAAGAAACTGAGTTCAGCTGATGACACAACAAAAATAGATGAATACATGAGTCGAGGAGATATACGGCAAGCCTTGAAACAAGGAGACCTGTATATCTGGGACCCTGTAGATGAGCAATGGTACCGGCACTACTGTGTAATCGCCGATGACAAGCTGTACTATGCCGAAGAGTATGAAGAGGATGAGGACAATAAAAAGAACGTGAAGAAGACAGAGCTGCACTTCACAGAGATCTGGTTCCATGGCAAGATGAGGGAGGGGCGCCAGGCGGCCGAGAGGCTCCTGCAGGAGTTCTGCGCTGAGTCTGGGGGGAGAGACGGAACTTTCCTGGTGCGCGAGAGTGACACCTTCCTTAAGGACTTCACGTTGAGAGGGGGAAGAGTGCAGCACTGCCGGATCCGCTCGGGGACGGAGAACGGAGAGACGTTCTACTTTCTGACGGAGAACCTGCACTTCGACAGTGTCTACAGCCTCATCATGCACTACAAGGAAAACCCCCTACGTTGCATGGAGTTTGACCTGAGACTCACAGATGCCGTGCCCAGACTCAACCCGCACGAATCCAAAGAGTGGTACTACAGCAATTTGAGCCGAGGAGAAGCGGAGGAAATGCTGATGCGGATCCCCCGAGACGGAGCGTTCTTAATCCGGAAGCGGGAAGAGCCCGACTCCTTCGCCATCACCTTCAGGGGGGACGGCATGGTGAAGCACTGCCGCATCCAGAAGGAGGGCTCCATGTTCGTGCTGGGCACTTCCACGGAGTTCGAGAGTCTAGTGGAGCTGGTGAACTATTTCCGGACCAAGCCGCTGTACCGGAAGATTAAACTGCGCTACCCTGTCACGGAGGAGGTGGTGCAGAGATTCAGCACAGAACAAGATTCGGCATCCCTGTATGAACTCAAGATGTATGTGGAGCCCAATGAAATAGAACCATCCCTGCCgaaaagcacagtgaaggctCTGTACGACTACAGAGCGATGCGCACCGATGAGCTGAACTTCTGCAAAGGGGCTCTGATCCACAATGTCGTCAAAGAGGACAGTGGCTGGTGGAAAGGTGACTATGGTGGGAAGCTCCAGTTATATTTCCCATCTAACTATGTGGAGGAGGTCTTCAACAGCAGCAACGTGGAGCCGATGAACAAGACCACTGAAGATAACCCGCTAGGAGATCTTTGCAAAGGCATAGTGGACATCTCACAGTGCTCAGTTGCCAAGTGTCAGCAGGTAAAGAACGGGATGTCATTTGTGTTCACCATTCAAACCAAAGAGGCCCAGGGAGTGCTGCCCTTCGACATCGCCACGGACACAGTGGAGGATCTGTTTGAGTGGTATAAAatcGAACAGCAGAAAGAGATTGAGAAGAGGGATGAAGTGGCGATTGAAATGTCTGACCTTGTTGTTTACTGCCAGCCACGGAGCAAAGACAAAGACAGCTTTGTTGGGTACACCTACAAGGAGATCCGATCTTTTGTGGAAAACAAAGCCCCCATTGCCAAGAGAACATGTAAGGACTTACTCAAATACAACCGCAAAGCTCTCAGCAGAATCTACCCCAAGGGTCAAAGAGTGGACTCCTCCAATTATGACCCCTACTCTCTCTGGACCTGTGGCTGTCACATGGTGGCTCTGAACTTTCAAACTCCAGATAAATACATGCAGTTAAACAACGCCTTGTTCACTCTGAATGGGATGACTGGCTATGTGCTCCAGCCGGAAATGATCCGCAGCGATTCGTACGACCCGGGTCAAGAGAAAAAGAACGTGAAGAGCATCATCACTATCCGAGTCATCGCTGCCCGCCACCTTCCAAAGCCTGGCCGAAGCATTACCAGCCCATTTGTGGAAATGGAGCTGTGTGGAATTCATACAGAGGAAagcaaattcaaaacaatagTGAAGAATGACAACGGGCTGAACCCTGTGTGGCCGGCCCCACCGGAGCCTGTGCAGTTCATGGTGTACGAGCCGGACCTCACCTTCCTGCGCTTCGTGGTCAATGAGGAGGACATGTTCTCTGATCCCAACTTCCTGGCCCAGGCCACCTTCCCTGTCAAAGGCATTAAGACCGgatacAGATCAGTTCCATTGAAAAACGGATTCAGTGAAGATATCGAGCTTGCTTCTCTTCTAGTCTACATTGAAATCGAGCAAGTAGAGAAAGCCGAAGAGGAGCTATACTCCTCTTTCAACCAGCTGAGAAAGCGCCAGGCTGAGCTGTCCAATGAGCTCTTCCTGTACGACACCCACCAGAACCTGCAGAAAAGCCCGTACAGCCGCGATGACCTGATGAAGGAGTTCAGCACCACCGAGAGTCAACTGCACAAAATCCAGGACACCTGCAAGCAAAAgatgaaagagaaaaagatcAACAACAGCAAGTTTTACTCATGAGCTCtctccacaaacaaacaatattttgagCACCAAACTCTCTTTCTCTGAGATTACAAGCGTCTTTTGAAGACTTTTGCGCTGGACTGATGTGCACACAGACAACGATGTCCAACTGAGACAGACAGCTGCTGCTCAATGGAATGGACATTTGACAAGCAGATCTTGCTTGCGCTGCATGATGACATCACACAGTGGAGTGGACATATCAGCTGGTTTTAGGCTTccattcttttcatttttttattttttcatttggttttgcttgtgtttgtatttatataatttagtgAGAAAGTGAAGTTTGGCAGCAATGAGGAGGAAACAGAAAGATTTGAATAATCTGCTTCAAAGGCCCTGGTGCTTTGCCATTGAGGACAGTTTGTTTCTTGATGTTGATTGAATTGCCCTGCAGTTTTACAGTTGGAAGTAAGTATACTTGCTCCCTGCCACTTCTTAGTTTTTAGGTTTGGTTGTTTGAATAAAGTGCTGTATTGAAACCCACTCACTGTCAAAGAAATGTCACAATTTCCCTTCATTATAGGTTCTTACTttggaattgttttttgtttaatttaaatccattcGGAGGGACAGATTGTGGTGCATAATGAACTAAACCTCACATACTCCACACTGCACAATAACACAAACTCAATAAGGTATAGCCTAAACGAAAACTATTACACAAACTTACTTTAGCCACACACTTTTTCAAGAATCCCACACAGGACAgtgataatacaaaataaatgtgtatgatCTGCCATTCCCCAGGATGAACATAACACAGATCCCAAACATGGATCTCTCTTCCACCATCCTGTATGAAATTTTTGAATATAGTAGAGGGTAAACTTGATGGCACTGAAAGAAGAACCATTGTCCCCCTAATTACTAAATGTCGTCTTTCTCAAATAGAAAGTTAAATATAAGTTTTTAATGCAGAAGGTGTTATTCATTCTAGAAGGTGATTCATTTAAGTTACCTTTTGTATAGAAATAATTAAGTGGAaccaattatgttttttccttttgaatcaCCCGTGTGACACATTGATAGCGTAAGTTTTCCAGGGTGACCACACCAGGACTTACGTGGGCAAATGTCATCATCCAGCATCAAAACATTTTGTAgttgtaatattttgttaaaagaaTCCTAATATAGACAGAAACTAATATTGAAACGGTCATTGTGCGGTGTACTGACATAATATGTAATCGGTGACGAGGTTTGCTTTGCTAACTCATCCATAAATCCTGGACACTTTGAAAGAAAACACGTTTTAAAAGTTGAGCAAAAACTaagatgaatgaataaataaatatttcatgtaTTATGCATTGCAGTAACccagtctttttttgtttcaacatCCAAGGAGATTATACAGTGCGGTTTGTTCATTGTGACTAGCAGGAGCGAATGTTACGTgatgtacattatattatagtagcagtagtaataataaattattgttataaCTGAAGAACA
>TU80711
AGAAAGCCGAAGAGGAGCTATACTCCTCTTTCAACCAGCTGAGAAAGCGCCAGGCTGAGCTGTCCAATGAGCTCTTCCTGTACGACACCCACCAGAACCTGCAGAAAAGCCCGTACAGCCGCGATGACCTGATGAAGGAGTTCAGCACCACCGAGAGTCAACTGCACAAAATCCAGGACACCTGCAAGCAAAAgatgaaagagaaaaagatcAACAACAGCAAGTTTTACTCATGAGCTCtctccacaaacaaacaatattttgagCACCAAACTCTCTTTCTCTGAGATTACAAGCGTCTTTTGAAGACTTTTGCGCTGGACTGATGTGCACACAGACAACGATGTCCAACTGAGACAGACAGCTGCTGCTCAATGGAATGGACATTTGACAAGCAGATCTTGCTTGCGCTGCATGATGACATCACACAGTGGAGTGGACATATCAGCTGGTTTTAGGCTTccattcttttcatttttttattttttcatttggttttgcttgtgtttgtatttatataatttagtgAGAAAGTGAAGTTTGGCAGCAATGAGGAGGAAACAGAAAGATTTGAATAATCTGCTTCAAAGGCCCTGGTGCTTTGCCATTGAGGACAGTTTGTTTCTTGATGTTGATTGAATTGCCCTGCAGTTTTACAGTTGGAAGTAAGTATACTTGCTCCCTGCCACTTCTTAGTTTTTAGGTTTGGTTGTTTGAATAAAGTGCTGTATTGAAACCCACTCACTGTCAAAGAAATGTCACAATTTCCCTTCATTATAGGTTCTTACTttggaattgttttttgtttaatttaaatccattcGGAGGGACAGATTGTGGTGCATAATGAACTAAACCTCACATACTCCACACTGCACAATAACACAAACTCAATAAGGTATAGCCTAAACGAAAACTATTACACAAACTTACTTTAGCCACACACTTTTTCAAGAATCCCACACAGGACAgtgataatacaaaataaatgtgtatgatCTGCCATTCCCCAGGATGAACATAACACAGATCCCAAACATGGATCTCTCTTCCACCATCCTGTATGAAATTTTTGAATATAGTAGAGGGTAAACTTGATGGCACTGAAAGAAGAACCATTGTCCCCCTAATTACTAAATGTCGTCTTTCTCAAATAGAAAGTTAAATATAAGTTTTTAATGCAGAAGGTGTTATTCATTCTAGAAGGTGATTCATTTAAGTTACCTTTTGTATAGAAATAATTAAGTGGAaccaattatgttttttccttttgaatcaCCCGTGTGACACATTGATAGCGTAAGTTTTCCAGGGTGACCACACCAGGACTTACGTGGGCAAATGTCATCATCCAGCATCAAAACATTTTGTAgttgtaatattttgttaaaagaaTCCTAATATAGACAGAAACTAATATTGAAACGGTCATTGTGCGGTGTACTGACATAATATGTAATCGGTGACGAGGTTTGCTTTGCTAACTCATCCATAAATCCTGGACACTTTGAAAGAAAACACGTTTTAAAAGTTGAGCAAAAACTaagatgaatgaataaataaatatttcatgtaTTATGCATTGCAGTAACccagtctttttttgtttcaacatCCAAGGAGATTATACAGTGCGGTTTGTTCATTGTGACTAGCAGGAGCGAATGTTACGTgatgtacattatattatagtagca

Function

GO: NA

KEGG:

id description
K05859 PLCG2; phosphatidylinositol phospholipase C, gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020621 True 5702 mRNA 0.45 33 26055287 26096957
TU80711 False 1697 lncRNA 0.38 2 26094663 26096921

Neighbor

gene id symbol gene type direction distance location
AMCG00020617 NA coding upstream 25838 26016891 ~ 26029449 (+)
AMCG00020610 cotl1,LOC107684658,LOC107587015,LOC107559813,LOC107722478,LOC107738394 coding upstream 65600 25972533 ~ 25989687 (+)
AMCG00020611 NA coding upstream 123145 25920639 ~ 25932142 (+)
AMCG00020616 NA coding upstream 170208 25877255 ~ 25885079 (+)
AMCG00020607 vps4a,LOC106939979 coding upstream 193555 25855088 ~ 25861732 (+)
AMCG00020624 NA coding downstream 123673 26220630 ~ 26230564 (+)
AMCG00020626 NA coding downstream 330969 26427926 ~ 26428763 (+)
AMCG00020629 NA coding downstream 345418 26442375 ~ 26471185 (+)
AMCG00020630 banp coding downstream 392349 26489306 ~ 26507324 (+)
AMCG00020631 NA coding downstream 794660 26891617 ~ 26904288 (+)
G64478 NA non-coding upstream 115174 25934905 ~ 25940113 (+)
G64457 NA non-coding upstream 159762 25894150 ~ 25895525 (+)
G64436 NA non-coding upstream 235505 25819391 ~ 25819782 (+)
G64406 NA non-coding upstream 326953 25721933 ~ 25728334 (+)
G64394 NA non-coding upstream 411913 25640593 ~ 25643374 (+)
G64555 NA non-coding downstream 98256 26195213 ~ 26197405 (+)
G64556 NA non-coding downstream 104107 26201064 ~ 26202040 (+)
G64557 NA non-coding downstream 110627 26207584 ~ 26207838 (+)
G64558 NA non-coding downstream 115923 26212880 ~ 26213093 (+)
G64559 NA non-coding downstream 116420 26213377 ~ 26213728 (+)
AMCG00020603 NA other upstream 276305 25762135 ~ 25778982 (+)
G64372 NA other upstream 501967 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 582401 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 970414 25078142 ~ 25084873 (+)
AMCG00020572 NA other upstream 978597 25062373 ~ 25076690 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1319039 27415996 ~ 27418520 (+)
G64887 NA other downstream 2776673 28873630 ~ 28874072 (+)
G64908 NA other downstream 2911706 29008663 ~ 29009601 (+)
G64979 NA other downstream 3367607 29464564 ~ 29465712 (+)
AMCG00020684 NA other downstream 3407270 29504227 ~ 29575346 (+)

Expression


Co-expression Network