AMCG00020624


Basic Information

Item Value
gene id AMCG00020624
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26220630 ~ 26230564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020624
ATGATGCAAGCACGCTACTCGGTGTCAGACCCCAACAGCCTGGGGGTCGTGCCTTACCTGAGCGAGCAGTCGTACTACAGGACAGCCAGCACGTATGGCAACATGCCCACCCCGATGAGTGTCTACTCGGGCCATGAGCAGAGGCGCTTCAAGAAGAAGGATACTTCCCGGGACAAGGACGAGCGCAGCACCCAGCTGAAGGAGCCCAGCAAAGGCCAAGGCCCGGTCTCCAAAGCCGAGGCGCCCTCCAAAGAGCTCCCACTCGAGAAGAAGGTCGTGATTAAAAGCGAGGCCTCGTCCCCAGACATACCTGTCATCACGAAGATGGAGACCATGAGCCCCGACAGCGGGAGTGTGATGCAGGACAGCCCGAGAAGCGTGGCCTCAACCCCGTCAGTGTCCACCGAGAGCTCCATCCCTGACCACCACCCCTCCAGCAACGGCCTGTCGGGGTTCAGTGTGGAGAACATCATGACTCTGAGGACTTCTCCTCAGGGGGACTTGAGCCCGGTGTCCGTCTCCTCCAGCCGGACAGGTATGGTCCCTTCGCTGTCACTCAGTTACCCGCAGGGCCAGCCCTCCATTTATAGCCAGGCTTGCACGCAGGGCATGGATTCTACCGCAGGATACCAGTGCAGCATGCGGGCCATGAGCCTGTACACCGGGGACCGCACTGGACACATGTGCGTCCCCACCACCGTGGAAGAGgccatctcggaccaccacggCGGAGCCACTTCCCCGCTGAACTCCGTCAACCTGGGAGCCAACCCGGAAAGCGTGCTGGTTTCCAGTCACCATCCACAGAGCGCAGGCTCCGGCCAGGCAGCATCTTGGTATCTCAATCACGGGGGGGATCTAAATCACCTTTCAGGACACAGTTTCAGCAACCAGCAGCAGACTTTCCCCAATGTGCGGGATGTGTTCAACTCGCACCGCCTGGGAATCGAGAGCTCAGCCCTCAGCGAGCACCAGGTGAGCGGCAACTCAAGCTGTCAGGTCCCGTATAGATCCACGTCCTCCCTTTATCGACACTCGAGCCCATATGCATATGACTGCACGAAAAGTGGAGCTGCGGCTTGGAGCTGCTTTTTTGTGGGGGGCTTGATCAACTTCAGCGCTACCTTCATGTCAATTGAAAAGGGGGATTTAGCAACCATGAGCCAAATTTACAACAGCCGCATCCAACAGCTTGGCGTCCCGCAGTCGGCTTTAAATCTTTCAAACTCTTCCTTGATATACGTCTATGGAGGGGAGAGGAACATCGATCCGAGACCTTTCAAGAGAAGCAAGCTGGCAGACGGGGTGCCGTTCCCATCTGCTCCTCGTCCCACTCATGGAGCTGACTTGGACGGCACAGCGGGAGGGAAAGCATTGGGTCTCCAGGCAGAGTCAAACGGGACCGGGggcaacactgacacacagcagcaggaaTCGCCGTCTGATGCCGAAGCTGCGGTGGCTTCATCAGATGGCACTAGCCCTGGGAGTCGGGTGGTGCAGTGTACAAAGGCGCACTACCCTGGCACGGCGACCGAGTCGGCTCCTCGAGTGGGCACCTCCGGGGAGACCTGGCACAATGTCCGGCCTTCGTCAGCACTCTGCGCCCCTGTGCGTATTGATCCACTATTTCCCCCAAAGGAAGCGAGCTTTCTATCCGGCGAGGACACTGTGTGTGTTAACGGTACTACCCAAAAGGATGAGGCGAAAAGTACCAAGACAGCTGGAGGGAGAACAGAAGATGGAGCTGCACCCGTTTCAGGTACTGCATCCCTAAATCCAGCCAGACAGCCCGACTCACCGAGCCAAATGGGTACCGAACCAACCAACCCCAAAGGAAGGATGCAAGCTACTCCCAAAAGCGCCGACAGGTCGAAAGGTTTTAGTATAGACAGCATTTTATCCAAAAAAAGTATACAAAGCCCTTCTAAAAGTCACATGTGTATATCAGCAATAGGTTCAGACAGTAGAGGTGGGGCGTTTGACAGCTACTCAGCGTTTAATACTTCATTGATGTTTGGTGCTCAGCAAGTGCCGGGCAGATTATATCAGATCGGGTTTCCCTTCCCTTACCTCCCTTTAACTTGCTCAGAGAAGCTACTTAACTTCCATTAA

Function

GO: NA

KEGG:

id description
K09396 FOXC; forkhead box protein C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020624 True 2115 mRNA 0.56 4 26220630 26230564

Neighbor

gene id symbol gene type direction distance location
AMCG00020617 NA coding upstream 191181 26016891 ~ 26029449 (+)
AMCG00020610 cotl1,LOC107684658,LOC107587015,LOC107559813,LOC107722478,LOC107738394 coding upstream 230943 25972533 ~ 25989687 (+)
AMCG00020611 NA coding upstream 288488 25920639 ~ 25932142 (+)
AMCG00020616 NA coding upstream 335551 25877255 ~ 25885079 (+)
AMCG00020607 vps4a,LOC106939979 coding upstream 358898 25855088 ~ 25861732 (+)
AMCG00020626 NA coding downstream 197362 26427926 ~ 26428763 (+)
AMCG00020629 NA coding downstream 211811 26442375 ~ 26471185 (+)
AMCG00020630 banp coding downstream 258742 26489306 ~ 26507324 (+)
AMCG00020631 NA coding downstream 661053 26891617 ~ 26904288 (+)
AMCG00020632 NA coding downstream 777303 27007867 ~ 27018076 (+)
G64561 NA non-coding upstream 3500 26216632 ~ 26217130 (+)
G64559 NA non-coding upstream 6902 26213377 ~ 26213728 (+)
G64558 NA non-coding upstream 7537 26212880 ~ 26213093 (+)
G64557 NA non-coding upstream 12792 26207584 ~ 26207838 (+)
G64556 NA non-coding upstream 18590 26201064 ~ 26202040 (+)
G64601 NA non-coding downstream 201110 26431674 ~ 26432153 (+)
G64603 NA non-coding downstream 203276 26433840 ~ 26435114 (+)
G64702 NA non-coding downstream 1012556 27243120 ~ 27244109 (+)
G64823 NA non-coding downstream 2098416 28328980 ~ 28415277 (+)
G64829 LOC107695930,LOC107555682,LOC107679971,LOC106573260,LOC106561533 non-coding downstream 2108471 28339035 ~ 28342230 (+)
AMCG00020621 LOC105904655 other upstream 123673 26055287 ~ 26096957 (+)
AMCG00020603 NA other upstream 441648 25762135 ~ 25778982 (+)
G64372 NA other upstream 667310 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 747744 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 1135757 25078142 ~ 25084873 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1185432 27415996 ~ 27418520 (+)
G64887 NA other downstream 2643066 28873630 ~ 28874072 (+)
G64908 NA other downstream 2778099 29008663 ~ 29009601 (+)
G64979 NA other downstream 3234000 29464564 ~ 29465712 (+)
AMCG00020684 NA other downstream 3273663 29504227 ~ 29575346 (+)

Expression


Co-expression Network