AMCG00020625


Basic Information

Item Value
gene id AMCG00020625
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26199871 ~ 26216813 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020625
ATGTCTGACCCGGGTGGAAGTGCCGGCTCCGTGGTGTCGGACCCGCAGCACTCCCGAAAACTGCTCCGGGCCCTGCGATCATTCCGGGGAGAGGAGTGTTTTCGGGATGCGGTTCTGGTCCTCGACGGTGAAGAAATCCCAATACAGAAAAACATCCTGGCAGCGGCCAGCCCAACAAGATTGAATTACAACCCTCCAAAAGAAGATGGCTCTGTTTATAAAATCGAACTTCAGGGGATTTCTGTGTCTGTCATGAATGAGATCCTGGATTACATCTTCAGTGGggagATCAGGCTGAGTGAGGATACCATACAGGACATGGTGCAGGCCGCTGACTTACTGCTCCTCACCGACCTGAAGGCCCTGTGCTGTGAGTTCCTGGAAGGCTGCATTGCGGCGGAGAACTGCATTGGGATCCGGCAGTTTTCCCTCCATTACTGCCTGCAGCATGTGCACTACGTGGCCACCGAGTTCCTGGAGACGCACTTCCGGGATGTCAGCGCCACCGAGGAGTTCAGGGAGCTGACCCCCGAGCATGTCAAGGGCATCATCGCTCTGGAGAAGCTGAACGTGGGCAACGAGAAGTACATCTTCGAAGCTGTGGTCAAGTGGATCGCCCACGACCTGCAAGCCAGGAAGGTGTTCATGAAGGACGTGATGTCAGAGGTCTGGGTGAACGGCCTGGATTCCAATTATATCCGCGAGCAGATGCTCAGTGACCCGCTGGTGCGAGACATCATCCGCGAGTGCAACAACATCCCCCTGAGCCCCCTGCACCACGGGGAGGCCCTGCTGGCCACCTTCAAGCCCCGGGGCTACTCTGAGTGCATCATCACCCTGGGCGGAGAGGACCGGGCTACCCGTAAACCCTCCGCAGTCATGCGCTGTATGTGTCCATTGTATGACCCAAACCGTCAGCTGTGGATTGATCTCGAACCCATGAGCATTGCAAGATTTGGCCATGGAGTGGTGGCAGCAGAGGGATTCCTCTTTGTGGTTGGTGGAACAGACGAAAATAAGGCCACCCTGAGCTCTGGAGAAAGGTATGACCCTGATACCAACACCTGGAGCCCCATCCCTCCTATGAATGAGCCCAGACACAACTTTGGGATAGTGGAGATTGACGGGCTGATCTATGTTCTGGGCGGAGAGGACGGAGAGAAGGAGTTGCTCTCCATGGAGGCATATGACATGCATGTGAAAACCTGGAAGACTCAGTCCAGCATGACCATGGTCAGAAAGATTGGATGTTATGCAACAATGAGCAAGAAGATCTATGCAATGGGTGGAGGCTCTTACGGCAAACTCTATGAATCAGTAGAGTGTTTTGACCCCAAAACTCAGCAGTGGACAGCAATCTGCCCTCTCAAGGAAAGAAGGTTTGGAGCTGTGGCCTGTGGAGTTGGGCAGGAATTGTATGTCTTTGGTGGGGTGAGGAGCCGAGAGACGGAAGACCCTCAGAACAACGAGATGCTGACCTGCAAATCTGAATTCTACCACGACGATTTCAAGAGGTGGATGTACTTAGACGACCAGAATCTCTGCATCCCAACCAGTTCCTCCTTTGTCTATGGCGCTGTTCCCATTGGGGCCAGTATCTATGTAGTGGGGGATCTAGACACAGGTACCAGCTATGATTATGTGCGGGAGTTCAAGAGAAGCACGGGCACCTGGCACAGGACCAAGCCGCTGCTGCCCTCGGACCTGCGGCGCACTGGCTGTGCTGCGCTGCGCATTGCCAACTGCAAGCTCTTCcggctccagctccagcagggTCTGTTTCGCATCCGAGTGCCCCCCACATAGGAGCTGGGACCCAGGGCCGAGGCTGCAAGAAGCCAGTGCATCACCACCTTCACCTGCCTGGAGCAAACAAGGTCACCAACACTAATATTGCTACATGCAAGGCATCAAAACCAGTATTACTTGTCAAAAAaagaacattgtttaaaaatgctttgcTCTGGAATGTCACAACGGTAATGCAGTGACTGTGGTGAATGCTTCAATCTTAAATCAACCTAGTTCGGATAAGTCATTTGTGTTACAGTGTCAGTGAGCAGATAAGGAGGCACATTTCAATTTCTTTGAGGTTTACAGTAGGGAGgatgttaatataaatgtttttttttctttagggGTTGCTAACACTTACCTGTCTGAGATACGTTTGACATTCACTGACTTTTTTGGGGTCAGGAATAGTTAAAATATGCAAAGTTTATTACTTATTTCACTGCTTAGTTAAACAAATGTCATAGTGATGCTTTTTTAATACATAGTCGTGTGTTTGACATGTAAATGTTACTACAGCTTTATCTGGGTTTTTCATAGGTTCCTTTTTAATAGTGGTGTCTTTCAtaatagtattttgttttatttgatatgtaCATTACTGTTTTTAAAGGAGTTGGAGTAGAAGATGTTGGTTCTTCAAGAAACACAGATAAAGCAATAAGAGACAACTCGCAGCTTTAGAGTGTTTTGATCGGATTGGTAATGCAGGGTCTGTCCGGTTGTGGTGTTCTCTGCTATGTAATCACAGagcagatacaaaaataataattgggaAATGGTTTGATCTGATACAGCAACAAGAATGacaagtgcaaaaaaaaaacctcagtttaactaatactaaataaaatataaggctttaaaattttaattcatactttttaatgttggattttaaatatctttttttttttttttttctttttcaaaaggtGCCTTTAAAGTTAACAGATTGAATATGCGTTCTCTGAATCAGCCTAGATCAGTCAAATGTAGTCCCAGTAGCAGGAACATCGCACCATCCATGGACTACAACTGGCTCCCTGTGTGTTACCAAGAGCTTACTCATCCTTTGCTCCTCCCTCTTGTCTAAGATAGAAATATGAGCTGCTGGTGTCACTGACTCTATGTAAATAGTTGTGGACAGGTCTCTGCTAAATGACACATGAGTGAGTTGCTGGTCGATGCCTGGTTTCAGCTCATGACCTGTTAAAGAGGGTTAAAAGCACAGAGCACTCCAAAACCAGTATAATTTATCACACATTTACAAGGATCAATTTGCTGCGgtcaaaattattttatatgtatactgAGAGCTGATGTCAGTTTTAACATTTggaatttatttctgttttttaatctgaGAACTTGCACAGTGAGTAGCATACATGTTACCTTTGATAACTGATAACAGTTCTGCCTTATAACAGGTCTAGGCTTGGGACTCTTGAGTTAATCCAGAAATCTCTAATTGGATTGAGGagattctattttttttaatcgcagacaaaataaacaagccaTCTGATTTCCACTGTGGCCCTTAAAATGGCAGACTCACTACTTTTTCTCTTTGTGGCACAGGACTTGCATTATGTGTAGAATATTGAGACTAAAGCCTGAGTATTTAGTATATTccattgaatttcatttaaagcaaacaaattcCTACTTATTAAATTCTTTGAGCTATCTATGAAAATTTTATTAAGAAGGCCTTATCCTTACTTATTATACTTTAGCAAACATTGCGCTATCTTAAACAATGTCTTTTGGATAAAGCACCGTGGTCTCTGTTCCAGTTCGATGTTGAGTTGGTTGAGTGCCTTCAGTTACAGAGGCAAGTGTTAAGGGTGCGATTGgacaacaacaccaccaaaaaGTTGCTTGTGTAGTTCTCGATGACTCTCAAGCTGCTTGAACAGCAGTATTTGAGACAAAACAAAGGTTGGAGCTCTAACCAACATGatccattttgaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10453 KLHL16, GAN; kelch-like protein 16 (gigaxonin)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020625 True 3792 mRNA 0.45 11 26199871 26216813

Neighbor

gene id symbol gene type direction distance location
AMCG00020623 cmip,LOC106573687,LOC106560887 coding downstream 20536 26178949 ~ 26179335 (-)
AMCG00020622 cmip coding downstream 70852 26109019 ~ 26129019 (-)
AMCG00020619 NA coding downstream 146143 26021742 ~ 26053728 (-)
AMCG00020618 NA coding downstream 228071 25966140 ~ 25971800 (-)
AMCG00020620 NA coding downstream 234564 25960378 ~ 25965307 (-)
AMCG00020628 NA coding upstream 155973 26372786 ~ 26393051 (-)
AMCG00020627 NA coding upstream 199162 26415975 ~ 26442453 (-)
AMCG00020635 NA coding upstream 885588 27102401 ~ 27108280 (-)
AMCG00020647 NA coding upstream 1043039 27259852 ~ 27269443 (-)
AMCG00020644 NA coding upstream 1064802 27281615 ~ 27286072 (-)
G64562 NA non-coding downstream 7193 26191561 ~ 26192678 (-)
G64510 NA non-coding downstream 210182 25985448 ~ 25989689 (-)
G64477 NA non-coding downstream 267729 25931699 ~ 25932142 (-)
G64418 NA non-coding downstream 420660 25691408 ~ 25779211 (-)
G64412 NA non-coding downstream 556498 25640570 ~ 25643373 (-)
G64608 NA non-coding upstream 210337 26427150 ~ 26428274 (-)
G64625 NA non-coding upstream 354689 26571502 ~ 26571716 (-)
G64627 NA non-coding upstream 418775 26635588 ~ 26635788 (-)
G64629 NA non-coding upstream 513042 26729855 ~ 26730111 (-)
G64630 NA non-coding upstream 514622 26731435 ~ 26732288 (-)
AMCG00020613 NA other downstream 251528 25934901 ~ 25948343 (-)
G64470 NA other downstream 281241 25898428 ~ 25918630 (-)
AMCG00020614 NA other downstream 294273 25886050 ~ 25905598 (-)
AMCG00020604 NA other downstream 484414 25687275 ~ 25715457 (-)
G64298 NA other downstream 869301 25330084 ~ 25330570 (-)
AMCG00020639 LOC107583916 other upstream 1029201 27246014 ~ 27249676 (-)
AMCG00020657 NA other upstream 1944789 28161602 ~ 28239074 (-)
G64811 NA other upstream 2009722 28226535 ~ 28229647 (-)
AMCG00020661 ss18l2 other upstream 2108224 28325037 ~ 28328312 (-)
G64882 NA other upstream 2571767 28788580 ~ 28796956 (-)

Expression


Co-expression Network