AMCG00020646 (zgc:173742,LOC108415671,LOC107553995,LOC107684664,LOC107749320,LOC108264272)


Basic Information

Item Value
gene id AMCG00020646
gene name zgc:173742,LOC108415671,LOC107553995,LOC107684664,LOC107749320,LOC108264272
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27435669 ~ 27474732 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020646
atgctGACTAAGAAGGTCAAGTCcacagaaatggagaaagagGTTGTTGGAGGGGAGGATTTTGTAAGTGTCGTTCAAGTAAAGATTAAGAGAGAGCCAGAAGAGGAGGGCTTTGCTGTAAACAAGAAGGCCAAAGGGAAGAAAAGACCCAGGGAGGAGGAACTGGTTGAGGGGCCCTCTTCTGAAACacaaggaaagaaaatcaagaAAGTGAAGATGGAGTTTGAAGAGGGAGAGCCAAGGCCAGAAATGCAGAGtcagaaaatgaaaggaaagaaaatgaaggcaaagaaagagagggaggaacaACCACTGTCTCCCAGAGGAGGAAGTAAGAAAAAGAAGAGCAGAGAGGAGATTGTGGCAGCGAAAGCTTTgaagattaaaaagaaagaggaggaggagcagcagcgCTGGCGATGGTGGGAAGAAGAGAAGTATGAAGACGGCATCAAATGGAAATTTCTGGAGCACAAAGGACCCTTCTTCCCTCCCGAGTACCAGCAAATTCCCGACAACGTGAAGTTTTATTATAATGGCCAACCCATGCCTCTCAGCCGAGCCTCTGAAGAAGTGGCCGTCTTCTTTGCGCAGATGTTGGACCACGAATACACGACGAAGGACGTGTTTCGGAATAACTTTTTTAAGGACTGGAGGAAGGAAATGACTTTGGAGGAGAGGATGGTGATCACAGACCTGGAAAAATGTGACTTTGGTGAGATTTTCACAATGCACAAGGAGCGAGTAGAAGCAAGGAAGATCATGAGTAAGGAGGAGAAGCAGATAATCAAAGAGTCCAATCAAAAAATATTGGAGATGTATGGCTACTGTGCTTTGGATCACCACCAAGAGAGGATTGGGAACTTCAAAATTGAACCCCCTGGTCTGTTCAGAGGCAGGGGGGACCACCCCAAGCAAGGCATGCTAAAGAAGCGCATCCAGCCGGAGGATGTCATCATCAACTGTAGCAAAGATTCAAAGATCCCAGAGCCGCCGCTCGGGCACAAATGGAAGGAAGTGCGCCACGACAACATGGTTACTTGGCTGGCAAGTTGGACAGAGAATGTGCAAGGATCCTGCAAGTATGTCATGCTCAATGCCAACTCCAAGCTCAAGGGAGAGAAGGACTGGGAAAAGTACGAGGTGGCTCGGAAGCTGAAGAACTGCGTGGAAGCTATACGGGCACAGTATCAGATGGACCTGAAATCCAAGCAGATGGGCATCCGCCAAAGAGCCGTGGCACTGTACTTCATAGACAAGCTGGCGCTGAGAGCAGGCACGGAGAAGGAGGAGGGCGAGACAGCTGACACAGTGGGCTGCTGCTCCCTGAGGGTGGAGCACATCACACTGCACCCAGAACTGGACGGAAACCAGTACGTGGTGGAGTTTGACTTCCTGGGTAAAGACAGCATCCGCTACTACAACAAGGTCCCTGTGACAAAAACGgtCTTCAAAAATGTGAAACTTTTCATGGAGAACAAGGAGGGAGGTGATGACCTGTTTGACAGACTGAATGCA

Function

symbol description
zgc:173742 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus.

NR:

description
PREDICTED: DNA topoisomerase I, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020646 True 1518 mRNA 0.49 13 27435669 27474732

Neighbor

gene id symbol gene type direction distance location
AMCG00020645 zgc:173742,LOC107684664,LOC107749320,LOC107553995,LOC108415671 coding downstream 10192 27421048 ~ 27425477 (-)
AMCG00020643 si:dkey-246g23.2,LOC107684666,LOC107749300,LOC107553994,LOC107670153,LOC107738383 coding downstream 27557 27406955 ~ 27408112 (-)
AMCG00020644 NA coding downstream 149597 27281615 ~ 27286072 (-)
AMCG00020647 NA coding downstream 166226 27259852 ~ 27269443 (-)
AMCG00020635 NA coding downstream 327389 27102401 ~ 27108280 (-)
AMCG00020649 NA coding upstream 47892 27522624 ~ 27523548 (-)
AMCG00020650 NA coding upstream 124482 27599214 ~ 27711704 (-)
AMCG00020651 NA coding upstream 277462 27752194 ~ 27786025 (-)
AMCG00020652 NA coding upstream 320524 27795256 ~ 27857618 (-)
AMCG00020653 NA coding upstream 388743 27863475 ~ 28035409 (-)
G64745 NA non-coding downstream 15023 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 199347 27236083 ~ 27236322 (-)
G64632 NA non-coding downstream 689846 26745549 ~ 26745823 (-)
G64630 NA non-coding downstream 703381 26731435 ~ 26732288 (-)
G64629 NA non-coding downstream 705558 26729855 ~ 26730111 (-)
G64847 NA non-coding upstream 842037 28316769 ~ 28323164 (-)
G64886 NA non-coding upstream 1383257 28857989 ~ 28858354 (-)
G64912 NA non-coding upstream 1521660 28996392 ~ 29001633 (-)
G64991 LOC103376870 non-coding upstream 1784825 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 2410869 29885601 ~ 29885899 (-)
AMCG00020639 LOC107583916 other downstream 185993 27246014 ~ 27249676 (-)
AMCG00020613 NA other downstream 1487326 25934901 ~ 25948343 (-)
G64470 NA other downstream 1517039 25898428 ~ 25918630 (-)
AMCG00020614 NA other downstream 1530071 25886050 ~ 25905598 (-)
AMCG00020604 NA other downstream 1720212 25687275 ~ 25715457 (-)
AMCG00020657 NA other upstream 686870 28161602 ~ 28239074 (-)
G64811 NA other upstream 751803 28226535 ~ 28229647 (-)
AMCG00020661 ss18l2 other upstream 850305 28325037 ~ 28328312 (-)
G64882 NA other upstream 1313848 28788580 ~ 28796956 (-)
G65000 NA other upstream 1906583 29381315 ~ 29405636 (-)

Expression


Co-expression Network