AMCG00020684


Basic Information

Item Value
gene id AMCG00020684
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29504227 ~ 29575346 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020684
ATGATGAGCAGCTACATCAAGTTGCCCGGAGTAGCAGAGGTGCAGGAGATATACCACCAACCACAGCCACCTCGTCGGAGATATGGAAGTCCACCCAATGCTGAAGCTGTGGCAATACAGGACGCACCTGTCAGACACGTTGCGCACGGAGTCGTCCGCCAGCCCCAAAATGACACAACTGAGGACATTACTTCACTACTGGTGGAGCTAGAAACTGTGCAGGCCCATGGAGCAGAGGAAGCCATGGTGGAGGATGGCACTCGGAGGAGGAAAGGCACTCTAAATGGCAGTGTGGGGCCCTCTGTGGACTCCAGGTCCCTGCACACTGAAGATGCAGTGAAAGCTACAGCACTAAAGAAAGATGTGGGGCTGATCAGCGGAATCTGTCTGATTGTTGGCTCGATGATCGGCTCGGGCATTTTCATCTCCCCCAAGGCGGTGCTGGACTACACTGGAGCTGTGGGgccctgcctgtgtgtgtgggcaGCCTGTGGGGTCATATCCACTCTCGGTAGCCAGCTTGACGCTGAGGCAATTCAACAGGCAGATCAGCACTGA
>TU81277
TAGGGAGTGCTGCTGTCAGGAAGCCATGGTGGAGGATGGCACTCGGAGGAGGAAAGGCACTCTAAATGGCAGTGTGGGGCCCTCTGTGGACTCCAGGTCCCTGCACACTGAAGATGCAGTGAAAGCTACAGCACTAAAGAAAGATGTGGGGCTGATCAGCGGAATCTGTCTGATTGTTGGCTCGATGATCGGCTCGGGCATTTTCATCTCCCCCAAGGCGGTGCTGGACTACACTGGAGCTGTGGGgccctgcctgtgtgtgtgggcaGCCTGTGGGGTCATATCCACTCTCGgTGCACTGTGCTACGCTGAGCTGGGCACAATGATAACTAAGTCTGGTGGAGAGCACTCCTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020684 True 558 mRNA 0.56 5 29504227 29532603
TU81277 False 354 TUCP 0.56 3 29525715 29575346

Neighbor

gene id symbol gene type direction distance location
AMCG00020683 NA coding upstream 22563 29475169 ~ 29481664 (+)
AMCG00020688 rgs9bp coding upstream 96989 29406522 ~ 29407238 (+)
AMCG00020679 slc7a9 coding upstream 184564 29302753 ~ 29319663 (+)
AMCG00020674 rhpn2,LOC107696719,LOC107722367 coding upstream 371648 29100637 ~ 29132579 (+)
AMCG00020673 NA coding upstream 482839 29020447 ~ 29021388 (+)
AMCG00020689 NA coding downstream 5 29575351 ~ 29577695 (+)
AMCG00020690 LOC106561240,LOC105895589 coding downstream 66308 29641654 ~ 29850555 (+)
AMCG00020691 LOC101173775,LOC107669552,LOC107084340,LOC107728098,LOC107663990,LOC107565340 coding downstream 409732 29985078 ~ 29986043 (+)
AMCG00020698 NA coding downstream 1164777 30740123 ~ 30746587 (+)
AMCG00020696 NA coding downstream 1172492 30747838 ~ 30756319 (+)
G64957 LOC103376870 non-coding upstream 164944 29259554 ~ 29339283 (+)
G64916 NA non-coding upstream 454412 29049493 ~ 29049815 (+)
G64894 NA non-coding upstream 566063 28937888 ~ 28938164 (+)
G64823 NA non-coding upstream 1088950 28328980 ~ 28415277 (+)
G65024 NA non-coding downstream 411219 29986565 ~ 29988128 (+)
G65063 NA non-coding downstream 1073478 30648824 ~ 30649364 (+)
G65067 NA non-coding downstream 1125108 30700454 ~ 30702157 (+)
G65163 NA non-coding downstream 1570741 31146087 ~ 31149761 (+)
G65223 NA non-coding downstream 1910237 31485583 ~ 31485902 (+)
G64979 NA other upstream 38515 29464564 ~ 29465712 (+)
G64908 NA other upstream 494626 29008663 ~ 29009601 (+)
G64887 NA other upstream 630155 28873630 ~ 28874072 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other upstream 2085707 27415996 ~ 27418520 (+)
AMCG00020621 LOC105904655 other upstream 3407270 26055287 ~ 26096957 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other downstream 957847 30533193 ~ 30536564 (+)
AMCG00020695 cdyl2,LOC106562298 other downstream 1111360 30686706 ~ 30700254 (+)
G65100 NA other downstream 1191678 30767024 ~ 30770927 (+)
AMCG00020708 LOC106562285 other downstream 1587255 31162601 ~ 31217840 (+)
AMCG00020715 gas8 other downstream 1884156 31459502 ~ 31484470 (+)

Expression


Co-expression Network