AMCG00020703


Basic Information

Item Value
gene id AMCG00020703
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30835572 ~ 30838031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020703
ATGTCCAGGAAGCACCGACTCATGGCTGCGGTTCTACCCGGGGAAGAGAGCGCCTTGTCCGGCAACGGCAGCAGAGCGGAGCGCAATGGCATCGGAgtgatgtattgttttatatgcGGAGGGGGGGTTTCGACCGGGAAAGAAGTCAAACTACAGGTTAAATATCAGAGGGAAAACTACCCCTTTTTCCCGTTTCTGCAACACCAGGAGCCGGCGCCGGGGGCTGACGAAGTTACCCCAGAGGGATGCGTGCTGGTGTGCGCGGTTTGCCAGTGTTTCCTGGGGGAGCAGTGGAACTCCTTCGAGAGGTCCAGGACCCCGATAGAGAAGCGCATGTACTGGCTGAAGCGGCCGTACCAGTGCGACTCCAGGCGGATCCCGCAGGAGTGGAACATCTCCTACGACCTGGAGAGGCGCATCAGCGTGAGTAGCCAGAATTTCGACGCACCTGAATCCGACCTGTCATCCCTTTCTGACAATGAAAACCTGTCGGATCAGGAGCTGGATCTAGCGGGCAGACCCGGCCCGAATAAAGAAGCGTGTTCGGGAATGCCCACCAGCAGTAAAACTTCCAAAGAAGGCGCCGCGAAACGAAGCGAGGCCAGTCTGAAGAGCAGCCCGGACGCCCCGCCGGGAGGCCGGTACACTGTGGGCGGCCACTCCGCGCAGGACGCGCCGAAATCGGATCCCGCTCTGCAGCCGAGGCGTCCGGCGCAGATCCTCAATCACAGATCCAAATCCCTGGCCCAGTTCCAGGAGTTTCTCCCGCAGCGGGGCTATGGCACCCCTTCTGCCGAGACACCTGTGCAAGACAACGGGATCATTATACGCAACAAGCAGTGGCTACCAGAGGAGAATGCCAACCATGCGGAGCCGCGCCAACACTCTGCCGACAGCAGCTGTAATCCCAGGCATCCTCTAGTCCTGCGACACAGAAGTCATAAAGCCGCAGATGTTGCCGATGCCGTCGGCGGGCTGTCACCTGTCCGAGCCCTGAGCGCTTCTGAGCGGGAGGCTTCAGACATGCTGCGTGGGACCCATCCGTGCAAGTCAAACCACAGCAACGACAGTAACCACTTTGGCGAGGACTCGGACTCCGACGACAATGAGATCAACATAACGAGTGACGACGACCCCGAGGTGTTTGATGTCAGTGGCAGCAGGGAGCGTGTTTTAGCCCTGAACAGGCAGCAAAGGGAGCCTGGAAGTGTCATCACAAAGCCCCCAAGTGCTGTGGAGGAGTGTGCCTGCTACATATGTGGCACCAGACTGTCCCAAAGTAAccagtatacagtgtgtgtgcagaagCAGGAGAGAACCTCAAACGAGCCCTTTTTCCCTTTCCTGTGGCTGCACAGCCCACCCCCCGGGGCCGTGCCTCTCAGCCCGGGAGGGTGCACGCTAGTCTGTTCGTGTTGTCATTCCTCCCTCATGCAGCAGTGGCAAGGGTTTGAGCTGGCCAGCGTGCCGGTTCTGCAGCGCCTGTATGTGGTGCCTTTAAATGCTGGCGTCTCAGGTCACGAGCCCCCCCCAGCTGAGAGCCAGGAGCCCGTGCCCGAGCCCGAGCCCGCCCGGGAGGCCTGCTTTCTGTGTGGCCAGGATTGCTGCAAAGACGTGAAAGTGGCCTGCACCAAAGCAGTGGGCAATCCCAAGAGTACCATGCACTTCCCCTTCATTAATTTGCTCCCCTGCCCTCCCAATGCCAGAGGGGTCAAGAATGGAAAGGTGCACTGCTGTCTGACCTGCTATAGCATTTTAGAGGATATGTGGGCAGCATATAGGTTGTGCCTCAGTGAGGAGCTCATCACATCAGTCAACACTTTCCTGGGGAGATACCACCAAACGGTGACTGGGGCCACCACTCAGACCAGCTGCCTGGGCCTCCCCAGCTCCCGAATGGGCCACACATCAGTATGCTACCTGTGTGGGGCAGAGCTGGTGGCCGGAGTGGAGTTCCAGCTCAACGTGAACCCCCCCGGCCgctgtggggagagagagccCTTTTTCCCCTTCCTGACTGTTCACCCGCCTGCTCCCCGGGCCAAGCCAGCCGACTCCACCGGCCTGGTGTCCACCTGTGTGCTGTGTTACCACGACCTCCTGGGCCAGTGGGTTCAGCATGAGAGCAGAGCCAGCCAGCCCACTAGCAGTCCCTGGTCCAGGCAGTACAACTGTGAaagctttgtgtgtttcttctgCAGACAGGAGAAGAAGCGCTGTCTGGGTTTAAAAATGGTTCACGTGGCCAGACTGCCAGTGTTTTTGTACGCCCCCAGAGTCAGTAACACTCTGGTTGTGGATGATGGGAAAAAGTTGACCATTGGATCTTGTGTGGAATGTAAGGCTATGGTATTGGCTGGCCAGAACATGAAGCAAAACAGCTTATTGGACAGCGCCTCGCCCCCCAGTAAACACAAGGTAAGTCACGCTCTACCTACAATCACACATCCTGTCATGTAG

Function

GO:

id name namespace
GO:0061982 meiosis I cell cycle process biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0031267 small GTPase binding molecular_function

KEGG:

id description
ko03430 Mismatch repair
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020703 True 2460 mRNA 0.58 1 30835572 30838031

Neighbor

gene id symbol gene type direction distance location
AMCG00020701 NA coding upstream 32055 30761959 ~ 30803517 (+)
AMCG00020696 NA coding upstream 79253 30747838 ~ 30756319 (+)
AMCG00020698 NA coding upstream 88985 30740123 ~ 30746587 (+)
AMCG00020691 LOC101173775,LOC107669552,LOC107084340,LOC107728098,LOC107663990,LOC107565340 coding upstream 849529 29985078 ~ 29986043 (+)
AMCG00020690 LOC106561240,LOC105895589 coding upstream 985017 29641654 ~ 29850555 (+)
AMCG00020704 NA coding downstream 270993 31109024 ~ 31131389 (+)
AMCG00020707 LOC106951238 coding downstream 314370 31152401 ~ 31155839 (+)
AMCG00020709 NA coding downstream 389091 31227122 ~ 31233624 (+)
AMCG00020710 foxf1 coding downstream 575494 31413525 ~ 31419355 (+)
AMCG00020714 NA coding downstream 658013 31496044 ~ 31503954 (+)
G65067 NA non-coding upstream 133415 30700454 ~ 30702157 (+)
G65063 NA non-coding upstream 186208 30648824 ~ 30649364 (+)
G65024 NA non-coding upstream 847444 29986565 ~ 29988128 (+)
G64957 LOC103376870 non-coding upstream 1496289 29259554 ~ 29339283 (+)
G64916 NA non-coding upstream 1785757 29049493 ~ 29049815 (+)
G65163 NA non-coding downstream 308056 31146087 ~ 31149761 (+)
G65223 NA non-coding downstream 647552 31485583 ~ 31485902 (+)
G65246 tubb3,LOC107552791,LOC108431516,LOC108272015 non-coding downstream 726802 31564833 ~ 31566359 (+)
G65266 NA non-coding downstream 797732 31635763 ~ 31636329 (+)
G65270 NA non-coding downstream 819695 31657726 ~ 31659455 (+)
G65100 NA other upstream 64645 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 135318 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 299008 30533193 ~ 30536564 (+)
AMCG00020684 NA other upstream 1260226 29504227 ~ 29575346 (+)
G64979 NA other upstream 1369860 29464564 ~ 29465712 (+)
AMCG00020708 LOC106562285 other downstream 324570 31162601 ~ 31217840 (+)
AMCG00020715 gas8 other downstream 621471 31459502 ~ 31484470 (+)
G65343 NA other downstream 1025352 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 1255993 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 1348583 32186614 ~ 32189381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location