AMCG00020705


Basic Information

Item Value
gene id AMCG00020705
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31146087 ~ 31151972 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020705
ATGAGGAGCTCGGTGGCGATGGCGGTGAAGCTGACCACGCAGGCGTACTGTAAGATGCTGCTGCACGCCGCCAAGTACCCGCACTGCGCGGTCAACGGGCTCCTGGTGGCCGAGAGGCAGAAGAGGAAGGACGGGCAGCCGGTGCTGTGTGTGGACTGCATCCCGCTCTTCCACGGCACCCTGGCGCTGGCACCGATGCTGGAGGTGGCGCTGACACTGATTGACACCTGgtgtaaggaaaataaatacatcatagcTGGATATTATCAAGCCAATGAGCGCATGAAGGAAATCAGACCTAACCAAGTTGCTGAGAAAGTGGCGGCCAGGATTGCGGAGAACTTCAACGAAGCAGCTTTAATAATGGTGGACAACAACAAGTTTACCATGGATTGCTGTGAGCCAATTCTGACTGTTTTTGAGCACCATGACAACAATGATTGCTGTGAGGACTGGTTAGAAGCCCAAAAGATCACGTCCGCCCTCCTGGAAAGCAGGTCCTATGACAACCTCACAGACTTTGACAATCACCTGGATGACCTGAGGAATGACTGGACTAATCCGGAGATCAACAAAGCCGTCCTGCACCTGTGCTAAGCCGACCTGGAACTAGCTCTCCTCAGCCATGTCTGCCAAACGGGACTNNgataccccccccaccccccagtgaACTGCTCAGAAGGGTCTTCTCTGCAGAGATGTTGCTGACTAAACTCCATTTCTGTAGGACAAGCTGAACATTGCCAGAAAATAAGTCTAGTGGAAAGTTTTTTCAGATGTCTTCTCAAAAATCCCTGTTGACAACGGTTTGTGTCaaataactatatacactgcagtTCATTTGCTGAGAACCACAGCTATCTGAACCTGCAACTACTCATGGCTATGTGTCTTACTGTAGGATAAAAGTTACTACCAATGTACACAAATGTCTGCAGGTTAGTGCTGATTTTAGCTAATACAGTAGTTGTGAAATTGACATATTTAAGAGGATTTactaattgaaaataatgttattttgctgatatacatttttacagatAGGTACTTTTGAGGTTTGAGTAGAGTAATGtgatttctgaatttaaaatctGTCTTTAAGTGTGTAGTGCGAGTCTCCCTACGTTTATATTCACAGAGAAGTCTCTGCTTACATCCACAACCCCCAAGAGAAATTCTGAAGTGCTTTCTGTCTAATTTTAGGTATGGCAGGTTAGAGTTAGTAAGTCTTTGTGcatattttacatgaatatgTCAGTTGTCCTATCTGAGGATTGAACGATGGTTTGAAAGATGATATGAAGATGCATTACATGgcaaattaagttaattttgcTCTTGAGTTCTTGGCATGtaaatgctgtttgtttgttcgttaGTTATGCTTCTTGTTTTATAACCATCTATTTTGagtctttaaataaaactgatgttTTTGAGATTATTCTTTTTGTCTTGTTCAACAGTTTATGCTCAAATCTTGGTCTATTGGAGGATACAATTAAGGTTTATAGTTAGTGTAAATTGTAGTAAAACTGTATAGACAGAAGTGGGGACGTGTACATGTTCCTTGGGAGTGTGATCTCATGACTGATTTAATTATAGAGAGTTatctttttctccttttaacCTTAACCGTAAGCTTGAGAATAGTGCTTTGTACATTCACAAGAGTCTTAAATGTTTTGGCgttttttgcatttctgtaaatgcATTAGTCTGCACAACACACATTCTGTTAACAATTGCTTTTAACttgcttttcacattttctctcCTTGTTAAAGAACACCTTGAAATATCTTATCTTGAAGTTAATGTGTTTTCCACTGTTGGTTGAGAATGTTAAATTAGATGGAGTCGCCAGAGTAAATTTTAGATTAAGATTAAGGCAGGgattagagagagaaaaagtgtcactttttgtgtattttgcctTTCTAATGGGAATTACTGAAGATTCAGAAACTCCACTGTAATGTTTGATATTAACTCCTACCATTATAAATAAAGATTATACAattgttgtatatttttctgaTCTACAATTTAGGTAAATAATCAATTATCTTTTGTGTTCACAGCCTGGACTGTTGCCTTTTATTGGTCAATATGTGGTTCCACTCATGAAATTCCAGAAATTCTAGTTATACAGCTAATCCtattttatgacttttttttcctaataatatttgtatatactttaaaaacagtACCACTTCAGTCATTTGATGTAAACATCTACCTGTGACTTACTAAccagagaaaaatataattgtagtCCTAAATATTTACACTTCATTTTTCCCAGATTAATTTAGTGGGTGCTTGGCCAACAccagataaagaaacaaacatttcgAGGTCTGACTAGCTCCAAAATAATGGGACAGTCCACAAGATTTTTCCTGCTACTGCTTTAGGCGTGTGAATGACAGAGCAGAATTTCCCAAACATTTCAATTTctaccttttttaaattgttgatGCCTTGTAAAATGTGACTTTTAGCCTTTGTTTGATAACTTCATTGTTTCTGAGTTATATTACTATATTCAATGGAGCCATGAGGTCCAACATACTGgctattttaaagattaattatagattgtaatttgtttttaactggaAATGCATTAGATTAGTACTATATGGttaattcataatttttttcAGTGTTGCATTTCATAAAGGGATTTAGTTTACATTGACCAAATTATCTTATAAatcttataaaatgtgttattattttgtagacCTGGTGAAGGGAGGGTTTCAATATTTTGATAGTTGGTAGGCTTCcccatttgaaatgaaaatgattcaTATGAGATCTTCCAAGCTGGAATTATGAAATTTGTTCTCTAAATGGACCTATTTTCAAGGATGTTTCTTGTAAATTCTCAAATCTaggttttttacattttattttaaatagccagctgtagaaattaatatttttaaagctctTTAAGACTACATTGATTGTTACTatgataaataatgcatttggtGTAACTGTAATGTGGTACTTTCCCCATTTATATATTAACTGATAGAGCCCAATCTGTCAATAAGAATTTACTGTGTTCTGCAATAAAGTTTATGAGCACTGAA

Function

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020705 True 3116 mRNA 0.37 7 31146087 31151972

Neighbor

gene id symbol gene type direction distance location
AMCG00020706 NA coding downstream 2684 31139693 ~ 31143403 (-)
AMCG00020699 NA coding downstream 386004 30758126 ~ 30760083 (-)
AMCG00020693 NA coding downstream 725453 30365020 ~ 30420634 (-)
AMCG00020692 NA coding downstream 1000560 30128219 ~ 30145527 (-)
AMCG00020686 NA coding downstream 1641675 29487288 ~ 29504412 (-)
AMCG00020711 NA coding upstream 274549 31426521 ~ 31432953 (-)
AMCG00020712 NA coding upstream 283656 31435628 ~ 31448649 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding upstream 367253 31519225 ~ 31543659 (-)
AMCG00020716 NA coding upstream 392596 31544568 ~ 31545686 (-)
AMCG00020719 def8 coding upstream 394401 31546373 ~ 31560989 (-)
G65109 NA non-coding downstream 315545 30830181 ~ 30830542 (-)
G65073 NA non-coding downstream 443914 30700486 ~ 30702173 (-)
G65071 NA non-coding downstream 452720 30693148 ~ 30693367 (-)
G65068 cdyl2,LOC106562298 non-coding downstream 473125 30672745 ~ 30672962 (-)
G65061 NA non-coding downstream 528953 30616880 ~ 30617134 (-)
G65166 NA non-coding upstream 447 31152419 ~ 31156265 (-)
G65178 NA non-coding upstream 60966 31212938 ~ 31217885 (-)
G65179 NA non-coding upstream 67571 31219543 ~ 31219744 (-)
G65221 gas8,LOC108276428 non-coding upstream 328784 31480756 ~ 31481969 (-)
G65267 NA non-coding upstream 496652 31648624 ~ 31648851 (-)
AMCG00020702 NA other downstream 337241 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 408111 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 614951 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 1612970 29520191 ~ 29533117 (-)
G65000 NA other downstream 1740451 29381315 ~ 29405636 (-)
AMCG00020713 NA other upstream 213691 31365663 ~ 31412823 (-)
AMCG00020746 NA other upstream 969913 32121885 ~ 32122933 (-)
G65549 NA other upstream 1206266 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 1402888 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 1455890 32607862 ~ 32610708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G156326 emc8,LOC106587369 non-coding NC_035914.1 CM008317.1 6056669 ~ 6061997 (+)