AMCG00020709


Basic Information

Item Value
gene id AMCG00020709
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31227122 ~ 31233624 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020709
CTTCTTTCTCAGCTGTCTTTCTAACACTGTGAGACATACAGCCCGAGCATAGTTTCCTTTACAGCTGATTTCTCGGAAAACTTTGGGTTTAGAAGAAACCCAATCTACCTCCGCTGATTGGCTAGGAGGGGTCAAAGCTGTTCTTGCCTGTGATTGGACGTCAATCAAATCTGACGCCCAATCGGGTTTCGCAAGAGAATCTGTACATGTGAATGAAATTTATAAACAAGAACTTTCATCAGCTCCAGCATTAGTGTTAGAGACCTTGGACTGCGAAGGACTGGCGCTATATAATCAATCAAGCCGCAGTTTCTTCAATATCATCAGGACATAATCAGGCTGCACGATGACTGACCGAAACCCGGGCGGCAGGAGGCTGAGGCAGTGGCTGATCGAGCAGATCCACAGTAACCTGTACCCCGGGCTGCTGTGGGAGAACGACGAGGAGACCATGTTCAGGATCCCCTGGAAGCACGCCGGGAAACAGGACTACAACCAGGAGATCGACGCGTCCATTTTCAAAGCATGGGCTGTGTTTAAAGGGAAATTTAAAGAAGGGGACAAAGCAGAGCCAGCGACCTGGAAGACAAGACTGCGTTGTGCACTGAACAAGAGCCCTGACTTTGAAGAAGTTACAGACCGGTCCCAGCTCGACATATCAGAACCTTACAAGGTGTACAGGATAGTTCCAGAGGAAGAGCAAAAATGTAAAATGGCTGCAGCCCTCAGCTCCAGCGATGTGACAGATATGGAGTGCAGTCCATTAGAAATCGAAGAACTCATAAAGGAGtcaTCACCTGAGGACTACATGGGTATAATCCGGAGAAGTCACTCCCCACCCCAGGATACTGTCAGGACGCAACCTCAACCCGAATGGTGGCCGTCGACATGTCTGAACTcagTTCAAGCAATGCAAGATTCTTCACCTGCTGGGAATTTCAACGCCgCCTTCTCTCAGATGATGATCACCTTCTATTATGGAGGGAAGTTAGTTGGCAACACCCTGACCACACACAACGAGGGCTGTCGGATCTCGCTGTTCCAGCCCCCCCTCGCCAACGAGATGCTGTACGGGCCCGACAGCCTGCAGAACATCCGGTTCCCGCCAGTGGAAATGATTGAAAATGAGCGGCAGCGCCACGTCACCAAGAAGCTGTTTGCCCATCTGGAGCGTGGGGTACTGGTGCGTGCCAACCGCGAGGGCATCTTCATCAAGCGGCTGTGCCAGAGCAGAGTCTTCTGGAGCGGCATGTGTTCCCAGTACAGCAGCTCCCCCAATAAGCTGGACCGGGACGCTGTCGTCAAGATCTTTGACACGGCCAGGTTTTTAACAGGTTTGCAGCTTTACCAGGAGGGCCAGTGCCCGGCCCCTGATCCAATTGTCACCTTGTGTTTTGGAGAGGAGTTTCCTGATGCTAACTCTGCTAAATACAAGTTAATAATTGTGCAGATCACTCAGATGAACTGCCAGCAAGTCCTAGATGCCTTCAATGCCAGGAGGACGAATTACAGCAGCGGCAACCTGGAGATATCTGATGAATCTCAAAATGACCAAATGGCTCGCATCTTCCAAGACCTCTGCAGCTATAATGGCCAGCCGCGCCCCTGCTTCCGGGAAAACCTACCTATTACTGTATAATCCAGGACAACAAGGGTATTGGGGTGTATGGATGGAGTTAGGGCATTTGGGGTAAGGATAGGGAGTAACTCTGCCTTATCTGGCCTTGTACTGACTGGATTGTGGCTGCCACCTATGGCTGCCACCATTTTCTGCAAATGTGAAAGTGCATTATAAACACTTTTCTCAAGTATCCACATCTGTGTAATGGAAGAAATGtcccatttaattttttaaccaGTGTAATTTGGATAGGTTTTACTATCTGTGAGGTTAACCACAATGTTGTAGACTtgcctatatatgtatatataaactacttaaaaaacatgttattattGACATTTTCTACTGAGATGTAATTTGTACTTGTAAATGTTAGAAattaagctttatttttaaataattgaatgtatagTGTGAATAGAAACTGAATCTCGGCGTGATAAATGTAGCATTATGATTTCATAAAGCTTAATTTTTATCAGCTATTATTACCAATGAATTAACAAACTTGCTGttcttgatttaataaagattctattttgtttaacttttgaA

Function

GO: NA

KEGG:

id description
K10155 IRF8; interferon regulatory factor 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020709 True 2179 mRNA 0.46 9 31227122 31233624

Neighbor

gene id symbol gene type direction distance location
AMCG00020707 LOC106951238 coding upstream 71283 31152401 ~ 31155839 (+)
AMCG00020704 NA coding upstream 95733 31109024 ~ 31131389 (+)
AMCG00020703 NA coding upstream 389091 30835572 ~ 30838031 (+)
AMCG00020701 NA coding upstream 423605 30761959 ~ 30803517 (+)
AMCG00020696 NA coding upstream 470803 30747838 ~ 30756319 (+)
AMCG00020710 foxf1 coding downstream 179901 31413525 ~ 31419355 (+)
AMCG00020714 NA coding downstream 262420 31496044 ~ 31503954 (+)
AMCG00020722 NA coding downstream 451505 31685129 ~ 31709788 (+)
AMCG00020723 NA coding downstream 480272 31713896 ~ 31720373 (+)
AMCG00020724 NA coding downstream 487238 31720862 ~ 31723055 (+)
G65163 NA non-coding upstream 77361 31146087 ~ 31149761 (+)
G65067 NA non-coding upstream 524965 30700454 ~ 30702157 (+)
G65063 NA non-coding upstream 577758 30648824 ~ 30649364 (+)
G65024 NA non-coding upstream 1238994 29986565 ~ 29988128 (+)
G64957 LOC103376870 non-coding upstream 1887839 29259554 ~ 29339283 (+)
G65223 NA non-coding downstream 251959 31485583 ~ 31485902 (+)
G65246 tubb3,LOC107552791,LOC108431516,LOC108272015 non-coding downstream 331209 31564833 ~ 31566359 (+)
G65266 NA non-coding downstream 402139 31635763 ~ 31636329 (+)
G65270 NA non-coding downstream 424102 31657726 ~ 31659455 (+)
G65276 NA non-coding downstream 448490 31682114 ~ 31683154 (+)
AMCG00020708 LOC106562285 other upstream 9282 31162601 ~ 31217840 (+)
G65100 NA other upstream 456195 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 526868 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 690558 30533193 ~ 30536564 (+)
AMCG00020684 NA other upstream 1651776 29504227 ~ 29575346 (+)
AMCG00020715 gas8 other downstream 225878 31459502 ~ 31484470 (+)
G65343 NA other downstream 629759 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 860400 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 952990 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 1040662 32274286 ~ 32280835 (+)

Expression


Co-expression Network