AMCG00020710 (foxf1)


Basic Information

Item Value
gene id AMCG00020710
gene name foxf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31413525 ~ 31419355 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020710
CGCTGATGACAGGAGATAAGTAAAAGGCGATCTCCAAAGGAAGGAAGAGAACAGACCAACAACGTTGAAAAGCGACTCCCAGTGCTTGTCCACTGGCTCTTAAAAGCAACCCAGACCTAGCCATCTTCGGTGAAGAAAGAGCGCACTTACGCATGCATTGTAGAAATAACTTTATAGTAGTTGTTTTGAGTTATTAtaactagtattattattatgatcagcCTTGATATTTTCAAGTTCTTTTGAGACTTTTagggttttcttttgtgtgtgtgtgtgtggacgtTTTTGCGAAATACTGCGTAAAGTTTTCACTTTGAAGCTTCTCCTTCAAATAAACGGGGGGGGTTCTGGTTTTCAAAGTGTCTGAAGTTGGGCGAAAGGACTTTGTAAATGACGGCAGAGGTTCAGCAACCATCGCAGACTCCTGCACAAAGCAGCCCGATGTCTGCAGCACCGGAAAAACCCAGCGGCCAGACTTCAGTCATGGAAACGGCCTCTTCCACCACTAAAACAAAGAAGACTAACGCTGGGATCCGCCGGCCGGAGAAACCTCCTTATTCGTACATCGCCCTGATAGTCATGGCTATCCAGAGCTCTCCCACGAAACGCTTGACGCTCAGTGAGATTTACCAGTTTCTCCAGAGCCGCTTTCCCTTTTTCAGAGGCTCATACCAAGGATGGAAGAACTCCGTGCGTCACAATCTGTCCTTAAATGAGTGCTTCATCAAACTGCCTAAGGGTCTGGGTCGACCGGGGAAGGGTCACTACTGGACTATTGACCCGGCCAGCGAATTCATGTTTGAGGAAGGGTCCTTTCGCCGAAGGCCAAGAGGATTTCGACGAAAATGCCAGGCACTGAAGCCCATGTATAGCATGATGAACGGCCTCGGATTCAACCACATACCCGAGTCCTACAACTTTCCGGGGGCCGGGGGAGCGCTGTCTTGTCAGCCCAACAGTTtatctttggacagtgggattGGCATGATGAACGGACACTTGGCAAGCAACGTGGAAGGGATGGGCTTGGCAGGACATTCTGTGTCGCATTTATCAGCCAATACTGGACATTCCTACATGGGGAGTTGTACAGGACCGTCAGGAGGAGACTACCCTCATCACGACAACTCGGTGCCGGCCTCTCCACTGCTAACCAGCGGCGGAGTGATGGAGCCTCACTCGGTTTATTCCAGCGCAGCCTCAGCTTGGGCCCCCACGGCGTCTGCGTCCTTAAATAACGGCACTTCTTATATTAAACAGCAGCCATTATCACCTTGTAACCCCGGAGCAAACCCACTGCAGCCCAGTTTACCGACACACTCTCTAGACCAGTCGTACCTTCATCAAAACGGCCACACTACCACAGACCTGCAAGTCCTGCAGCGAGGGCACCTCTGTGGGGCAGTGCTCAGACGTGCCAGTCCTGCAGCGAGGGCACCTCTGTGGGGCAGTGCTCAGACGTGCCAGTCCTGCAGCGAGGGCACCTCTGTGGGGCAGTGCTCAGACGTGCCAGTCCTGCAGCGAGGGCACCTCTGTGGGGCAGTGCTCAGACGTGCCAGTCCTGCAGCGAGGGCACCTCTGTGGGGCAGTGCTCAGACGTGCCAGTCCTGCAGCGAGGGCACCACGCCGCGCGCACCCCCTGCGCCCCTGCAGCGCGAGCCTCGGGCAATTAAAGCCCCCCGATCCGCACACACCCCAGTGCTCACCAgCATCCCGCGGTATCACTCCCAGTCCCCCAGTATGTGTGATAGGAAGGAATTTGTCTTCTCTTTCAACGCTATGACATCTTCGGCGATGCACTCTACAGGCGGAGGGTCCTATTATCACCAACAAGTCGCCTACCAGGACATCAAGCCTTGCGTTATGTGACAAGGTGCTTTACAGCTACACTAAAAAGAAATCCAACACTACCGAAAGCCACTGAACCTCTCTTGAGATTGAGAggactgaaatatatatatagaccagTGGGGACAAcgtggaaaaacaaatatagtaGGCCTACCCccaaaaacattacagaaaaaacaacaatataccTGTACTCTGGAAGAGACCAATATTAGGCTACATGTATAACCTACAAACAGGAGCAGtttctattttttccttttcttttttgctgctCATGTACAACATTTTCGAAAACAATAAACGTCTGAAATGTAAAGTTTGAGGAAGACACTGACTTAACCCGGAAAACTTTGAACATATCTCGACTGTTGAACATACTGACTATGGCAATATGAAGATGCATCACTATCCCTCGACCTCACTTTTGGGTTCTCTCTCTGCTGGCGGATGACTACCACTGTTGTACCTTTGCTAcgtgttattttaaaatcaacacacacaggaagagCTGAAGAATAATCTGTTTTTTACCCAATTTACACCCCCAGCCAACATGGTGCATCAACACATGGTTTAtataagttgttgtttttctgtataatGCGGGCGCTGTCCCGCGGAATATGGTATATATGGATAATTAAAACGTGCTTTGActttttatcattaaatataaatggacACGATTTTAACGACTGCGGAGAAATTAAGGCACTTTTTTTATAGCAAAGCGCAACCTCTTATTTATTCTGCGTATACTTAACTGTAAAAACATAGCCTCAGTATTAAACGGTTTGTACTTTACTGGCAATATTTGCCATGAAGATTtcgtttttgttgttttagaatTCGATGTAAACCAAAGTTCAATATAATCTGTAACTTAATGTCAGttacatagttttttttttttaatgtgtgtatatccGTATTGACActcatgttattttttcttcGGCACTGtataaattgtaaatgtgtattgtctttgtgtatttttctgatTGACCAAAATGTTTCAGTCTGTACATAGACtacacaatatttgtattataaaagtaaaagtattgGCATGCAGTTTTTGAGTGAAACTGTTAGAAacacatataaacatttttccAACGAATGTTTGTTGTCCATTTGTTCAgttcttgtatttattaaaaacgcCGTGCTACCAATACTCATACAATTTATCAAGAAGTCTATAGTTTAGATCAGATTAATATTAAGTATAAGTTGTAGGCCTACTTATAATGCAAATAACGTGCCCag

Function

symbol description
foxf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in nucleus. Is expressed in gut; head; swim bladder; and swim bladder bud. Human ortholog(s) of this gene implicated in persistent fetal circulation syndrome. Orthologous to human FOXF1 (forkhead box F1).

NR:

description
PREDICTED: forkhead box protein F1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020710 True 3132 mRNA 0.46 3 31413525 31419355

Neighbor

gene id symbol gene type direction distance location
AMCG00020709 NA coding upstream 179901 31227122 ~ 31233624 (+)
AMCG00020707 LOC106951238 coding upstream 257686 31152401 ~ 31155839 (+)
AMCG00020704 NA coding upstream 282136 31109024 ~ 31131389 (+)
AMCG00020703 NA coding upstream 575494 30835572 ~ 30838031 (+)
AMCG00020701 NA coding upstream 610008 30761959 ~ 30803517 (+)
AMCG00020714 NA coding downstream 76689 31496044 ~ 31503954 (+)
AMCG00020722 NA coding downstream 265774 31685129 ~ 31709788 (+)
AMCG00020723 NA coding downstream 294541 31713896 ~ 31720373 (+)
AMCG00020724 NA coding downstream 301507 31720862 ~ 31723055 (+)
AMCG00020729 wdr59,LOC107686576 coding downstream 306829 31726184 ~ 31753719 (+)
G65163 NA non-coding upstream 263764 31146087 ~ 31149761 (+)
G65067 NA non-coding upstream 711368 30700454 ~ 30702157 (+)
G65063 NA non-coding upstream 764161 30648824 ~ 30649364 (+)
G65024 NA non-coding upstream 1425397 29986565 ~ 29988128 (+)
G64957 LOC103376870 non-coding upstream 2074242 29259554 ~ 29339283 (+)
G65223 NA non-coding downstream 66228 31485583 ~ 31485902 (+)
G65246 tubb3,LOC107552791,LOC108431516,LOC108272015 non-coding downstream 145478 31564833 ~ 31566359 (+)
G65266 NA non-coding downstream 216408 31635763 ~ 31636329 (+)
G65270 NA non-coding downstream 238371 31657726 ~ 31659455 (+)
G65276 NA non-coding downstream 262759 31682114 ~ 31683154 (+)
AMCG00020708 LOC106562285 other upstream 195685 31162601 ~ 31217840 (+)
G65100 NA other upstream 642598 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 713271 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 876961 30533193 ~ 30536564 (+)
AMCG00020684 NA other upstream 1838179 29504227 ~ 29575346 (+)
AMCG00020715 gas8 other downstream 40147 31459502 ~ 31484470 (+)
G65343 NA other downstream 444028 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 674669 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 767259 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 854931 32274286 ~ 32280835 (+)

Expression


Co-expression Network