AMCG00020711


Basic Information

Item Value
gene id AMCG00020711
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31426521 ~ 31432953 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020711
GTTCCCAGCCTGTGcaatgaatgtgtttattgatgCCTAACATTGTAACACACGCTGTTATCACCATATCATTAGAAGTCCATTTGTAagactttattgtatttattagtaaTTCGTAGCCAGCATATTTAtagtgtattatatttgtacaaAGTAGCATCCAGTTTCCTAGGCGGCCACTATAAAACTTTGGGAATGGAACCTGCTATCAAGTTAAATCCTGGCTGTACGAAATGGGATATTCGGCAGAAAGTCTGGGATTACATTGAAGCCAACAATCTGGCCAATTTCCCCAGACCGGTTCACCACAGAATACCCAACTTCAAGGGAGCCGCACAAGCAGGGGGAAAGCTGGCAACTTTACCGGAGTTCAGGTCCTCTAGTGTTGTCAAAGTGAACCCAGACAAGCCCCAGGAGCAGGCTCGCTTTATTACCCTGGACGGGGCCTATGCGGCTTGTGAACACGTCACAAACCTGGAGGTGTTCCAGAATGCGAAAGAGGTCAAAGTGGACCCCGACAAACCGCTAGAGGGAGCTCGCCTGGCTGCCCTGCAGgcaAGAAAAACATTGCTGGTCCCCACCCCACGCCTCAGGACTGGGCTGTTCAATAAGATTGTCCCACCTCAGGGAGCCACAAAGGAGGAACTGCGTATCTGCTCCACATCCCGGGGTGTTAAGGAGTATAGTGTGCCCATTGGTTTGGACGCTTCGGTGCATGTTGACCTGGTTGTGGTGGGGTCCGTGGCAGTGTCTGAGAAAGGCTATCGCATAGGAAAAGGAGAAGGCTTTGCAGATCTAGAGTATGCCATGATGGTGGCAATGGGAGCTGTGACAGACTCTACAATCATTGTTACTATTGTCCATGACTGTCAGATTGTTAATATTCCAGAGGAGCTTATTGAAAGTCACGATCTCACAGTGGATTACATCCTCACGCCAACTAGAGTGATTAAAACTGACTGCACATGCCCAAAACCACAGGGGATTTTGTGGACTAAGTGTGATGTGGACACACTGGAGAAGATCCCCATTCTGAAAAAACTCTGCCGTATGGAAGAAGAGGCAGGGAAAGATGTGGCTTTGAAGAAGGAGCTCCCTAGAGGTGACCCTAGCCAGGCTGCAGCAAGGGAGCCTGGGAAGCGGGATGGGGAGCCAGAGAGGGGCGGTGGGAGTGTCCCGGCCTCAGTGTCAGAAGTCCCCAGACAGGGCCGGATCACTACGGTTTACATGGGTGGCATTCCCGCCGGCCTGCGGGTGAGTGAGCTGAAAGGTGTGCTAAGAGAGCGGGGAGCCCTGCCCTTACGCCTGAACTGGCAGGGGGCACAGCACAGGGCCTTCCTGGATTACACCGACCTTCATAGTGCAGAGGAGGCCCTGGCAGCTCTGCAGGGGCTCATCCTCAGTGGCAACAGTGTCTGTGCTGAGCTGGCCAGGAGTCAGAGGGGTGACAGGAACGCAGGCCGGGCTCCCAGGAGACCCAAGGTGACCAAAGCTGCAGAGAGTGGAGCCCAAGACCAGAGCGCTCCATAAACCCACTGCTTTGCTAGATGTTCTTGACTCGATAGTTGGCCTGTGTGAAAGAGGACCCTTCTGTTCTTCATTGCTTTGCTGAAGATGTTGTACTCTTGATGATCACTTGTTGTATAATTTGGTAATAGAACATGGTGACAAATAAGGCATGTGTTGACTAGGAAACACGAGCAATGaggaaagttttatttttgtaggaaCTGGTATTATCTTTGaaacagatttgtattaatatatatagcacattattcttatttagcagacacccttttcTAAGGCAGCTTACATGGTTCAACAATCACTAGCATACAATGTTACACACGCACCATAATACCAATGCGTCTATCACTATATAAAATCATCATTACAGTGAATCACATTATGGTATTAGAGAATATTAAAATGGTCTAATCTCAACAGCTGTGGCAGGAGGTTAGACATTGTGCAGTTCTGATGTTCATGGCAACTCATTTTGTCATAAATGAATGGTCCTCTAAGTGAACTGTGAGCACTGCCAGTATCTCCATGCTTTACAAGGGTTATTATATTCAACGTAtaagaataattaaacaatcatcAGCTcttcattactttttaaacacTGAAGACATTTAATCAATTATATCCTGGTCAATTATACTGACAAGACGCAGAAGTGTTTCAAGGTTCTACTTAAATTGTGTAACAGATTCAGTTCAACTTGctttacacaaatatacatatgatTAATGCAAAACACCTGTAAGTGCAGTACATACCACAGCCCAAAGTACCAAATCTAAATGCTGAAACAAGGTGTGCTCcactgatttcattttaaaaccaaaaatgcccaataaaaagcagaagaacccacacatgcaaatgtattccatgtcaagtttttttacattgtgcaatgtttttatttaaaatcatagcTCATTGTGG

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K24991 MTHFSD; methenyltetrahydrofolate synthase domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020711 True 2460 mRNA 0.46 9 31426521 31432953

Neighbor

gene id symbol gene type direction distance location
AMCG00020705 NA coding downstream 274549 31146087 ~ 31151972 (-)
AMCG00020706 NA coding downstream 283118 31139693 ~ 31143403 (-)
AMCG00020699 NA coding downstream 666438 30758126 ~ 30760083 (-)
AMCG00020693 NA coding downstream 1005887 30365020 ~ 30420634 (-)
AMCG00020692 NA coding downstream 1280994 30128219 ~ 30145527 (-)
AMCG00020712 NA coding upstream 2675 31435628 ~ 31448649 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding upstream 86272 31519225 ~ 31543659 (-)
AMCG00020716 NA coding upstream 111615 31544568 ~ 31545686 (-)
AMCG00020719 def8 coding upstream 113420 31546373 ~ 31560989 (-)
AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding upstream 131880 31564833 ~ 31573696 (-)
G65179 NA non-coding downstream 206777 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 208636 31212938 ~ 31217885 (-)
G65166 NA non-coding downstream 270256 31152419 ~ 31156265 (-)
G65109 NA non-coding downstream 595979 30830181 ~ 30830542 (-)
G65073 NA non-coding downstream 724348 30700486 ~ 30702173 (-)
G65221 gas8,LOC108276428 non-coding upstream 47803 31480756 ~ 31481969 (-)
G65267 NA non-coding upstream 215671 31648624 ~ 31648851 (-)
G65297 NA non-coding upstream 278581 31711534 ~ 31711764 (-)
G65314 NA non-coding upstream 323309 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 324498 31757451 ~ 31758500 (-)
AMCG00020713 NA other downstream 13698 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 617675 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 688545 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 895385 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 1893404 29520191 ~ 29533117 (-)
AMCG00020746 NA other upstream 688932 32121885 ~ 32122933 (-)
G65549 NA other upstream 925285 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 1121907 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 1174909 32607862 ~ 32610708 (-)
G65641 NA other upstream 1222181 32655134 ~ 32657019 (-)

Expression


Co-expression Network