AMCG00020713


Basic Information

Item Value
gene id AMCG00020713
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31365663 ~ 31412823 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020713
ATGGAGGGGACAGAATCACTTTCGTGTTTTAGTAACTTCCTCTGGGTCCTGCCATGGATCGAGGAATTatCTCACGCAATGAAGCACTGGTCTCCAAAGCAAGAGCACGGAAGCTGTGAAGTATCTCAGTACTTTTATGATTCCTTTAGGCGCTCTCGGCCGTGGGTGTCGGGGGAAGCTGTGAAAAACAGCGCTCGG
>TU81542
CTAGATCGGCTAATGCCCCTTTCTGATACTTTGAAAATGTCCGTTTTAGAGAGAGTCGTGTATTTGgatttgacttttaaaaataattgcagaTAGACTTTAAAGCTCTTCCCGagacgatttttttttttttttgtactttaaagAAGAGGGAAATGCATCCCCTGCGTTTTGCTGCACACCATCTGAACTACAGAATTTGAAGGGGATATGTAGAGGCGCCTGGCATCCTTTCTTGCATCAGATGTCATCCACAAATCAAGatCTCACGCAATGAAGCACTGGTCTCCAAAGCAAGAGCACGGAAGCTGTGAAGTATCTCAGTACTTTTATGATTCCTTTAGGgatttgGAAGGATATAATTTGGAACTGCTACTTAAGACTGTGAGATGTCAAGAGGTTTGGTTCAGTCATTCAAGTATTCCAAGAACTGGGAAAAGGAAAGGGAACATACCTGCGAAAATGTTGGATAGATATAAACTAACACCTTCTGTTATCAGTTGATCTCTTAATTCAATGTAATTCAGGAGTAGTCTTTGTGCAGGTCTTAAATACACATAATGAgttatattttgcattgcaaAGGGTCTGCCTAGTACTTGAttcttttttcaatttattttaaattgtcagacttttttgttttatgtgatttttaagctcactattactattactttgtttttgtctgctatgttaaatattgtaaatataactTTTGCCTGAATTTTAGTACAGGTAATATACTGAGAAAACTGTCTAAAACAATGTGTtagacaataatacattaatgctTCTCCTTTAACATGTTTTCATCTGAGATTAGTGTTCAAGTATTTGACCACTAAATTATCTCTCTTTatttcaatcattttgtttaatgttttgattttaaaatgtcattcagCCAATAATTGTTTGTAATGCAACACATATATAACAACAAGAATCAGATATTGTATATACATTGAATACAATGCACTTTCTTGAACAAAtgctttgtaaatatattggtataatttgagaaaaaagtctgttttttgggcttattttctattttgaaattaattacattaatgtagTTTAGATGACTTTTTGCTTCACAGTGAAAAACTCAGATAAACTGACAATGTATTCccgagaataaataaatacagaaacaatgagtgactgttacattttgtttcttttattttaaaatatatgaaaatgtgcCTTAATTAAAATTCTGTGAAAACAATCTTAAGGTCTTTTAAAGACACAAACCCATAAACCTTCAATATTCACTTTTTATTGGGTGATTCTATTTATCTGTCAGTAGAAAATGCATGACAGGTTTTTTTAAACGATTggcaatatttataaatatagcaGACAGGGCTGGGATAATATCAAGGCTTAACTGACAGCATATTTACTCtgttccttttgtattttgtaaaccTCTAATGTGGATTTTATGTTTATACAAACttgaaaataatgcataaatcTGAAACAATGTGCAATATaacccaaaaataaacaaagatgcTGCATTTcattgaattaaaacaatgtcacagtttagtttttgtattttatttaacctttctttcttgtttttccttgtcTTATATGTCACACTGAACAAAGCCTTCCAAACAGGCTATAAAAagtaatagattttatttttggaaatagtTCCAGTAGTCTAAATATGTCTGCCCTAGTAGTTACTctttatgtttattgttttgtgatgTTATGTCAAAACTTAATCTTGACAAAgggcatgtttttattattaaaaatcaatatatgaACCTCATTCTTCATTTCTTATTTCACATGCACATTTACAACTTATTAACCAGCAGTATGGTTATATTTCCTTATGACATACTGTGCAGTGAGAAAGTCAGCAGCTTGTGCCTTGGACATTTTCTTCTGAATTTAAACGCAAGTCGAACCAGCTGATTTATAGCTCTGTTTATCAACATATT

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020713 False 198 mRNA 0.51 3 31365663 31403948
TU81542 True 1985 lncRNA 0.31 3 31390924 31412823

Neighbor

gene id symbol gene type direction distance location
AMCG00020705 NA coding downstream 213691 31146087 ~ 31151972 (-)
AMCG00020706 NA coding downstream 222260 31139693 ~ 31143403 (-)
AMCG00020699 NA coding downstream 605580 30758126 ~ 30760083 (-)
AMCG00020693 NA coding downstream 945029 30365020 ~ 30420634 (-)
AMCG00020692 NA coding downstream 1220136 30128219 ~ 30145527 (-)
AMCG00020711 NA coding upstream 13698 31426521 ~ 31432953 (-)
AMCG00020712 NA coding upstream 22805 31435628 ~ 31448649 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding upstream 106402 31519225 ~ 31543659 (-)
AMCG00020716 NA coding upstream 131745 31544568 ~ 31545686 (-)
AMCG00020719 def8 coding upstream 133550 31546373 ~ 31560989 (-)
G65179 NA non-coding downstream 145919 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 147778 31212938 ~ 31217885 (-)
G65166 NA non-coding downstream 209398 31152419 ~ 31156265 (-)
G65109 NA non-coding downstream 535121 30830181 ~ 30830542 (-)
G65073 NA non-coding downstream 663490 30700486 ~ 30702173 (-)
G65221 gas8,LOC108276428 non-coding upstream 67933 31480756 ~ 31481969 (-)
G65267 NA non-coding upstream 235801 31648624 ~ 31648851 (-)
G65297 NA non-coding upstream 298711 31711534 ~ 31711764 (-)
G65314 NA non-coding upstream 343439 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 344628 31757451 ~ 31758500 (-)
AMCG00020702 NA other downstream 556817 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 627687 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 834527 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 1832546 29520191 ~ 29533117 (-)
G65000 NA other downstream 1960027 29381315 ~ 29405636 (-)
AMCG00020746 NA other upstream 709062 32121885 ~ 32122933 (-)
G65549 NA other upstream 945415 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 1142037 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 1195039 32607862 ~ 32610708 (-)
G65641 NA other upstream 1242311 32655134 ~ 32657019 (-)

Expression


Co-expression Network