AMCG00020715 (gas8)


Basic Information

Item Value
gene id AMCG00020715
gene name gas8
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31459502 ~ 31484470 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020715
ATGTTAGATATCACTTTTCATtatcagaagaagaagaaaaaggtagCAGAGCTGGAGGAGCACATCGTCCGCCTGCGGGAGGAGCTGGACCGTGAGAGGGAGGAGCACAACTATTTCCAGCTGGAGCGAAAGAAAATGCACACCTTTTGGGAAATCACCAACAGACAGCTGGAGGAGAAGAAAGCTGAGCTCCAGAACAAAGATCTGGAGATGGAGGGCTCCGAGAAAGTGCATCTAATGGAAATCAAGgtTTACAAACAGAAGGTGAAACACTTACTATACGAACATCAGAATAGCATCTCGGAGCTGAAAGCTGAGGGGGTTGTGTCTATGAAGCTGAGTCAGAAGGAGCAGATTGAGAAGGAGGCAGAGTTACACAAGGGTGTGCGTACCCTGAAAGTGGACCTCAAAGAGCAGGAGCTTTCAAATGAGAATCTAGTGAAGAGCTTGAAACTGGTATGA
>TU81555
CTCCAGATGACGTCACAGACAGCGCTGCTAGGATGCTGGTGCAAGTTGTGTGACACCAGCGCCACCGCAGTGTAGTTGAAATGCGGCGGAATGaagaagaagaaaaaggtagCAGAGCTGGAGGAGCACATCGTCCGCCTGCGGGAGGAGCTGGACCGTGAGAGGGAGGAGCACAACTATTTCCAGCTGGAGCGAAAGAAAATGCACACCTTTTGGGAAATCACCAACAGACAGCTGGAGGAGAAGAAAGCTGAGCTCCAGAACAAAGATCTGGAGATGGAGGGCTCCGAGAAAGTGCATCTAATGGAAATCAAGgtTTACAAACAGAAGGTGAAACACTTACTATACGAACATCAGAATAGCATCTCGGAGCTGAAAGCTGAGGGGGTTGTGTCTATGAAGCTGAGTCAGAAGGAGCAGATTGAGAAGGAGGCAGAGTTACACAAGGGTGTGCGTACCCTGAAAGTGGACCTCAAAGAGCAGGAGCTTTCAAATGAGAATCTAGTGAAGAGCTTGAAACTGAAACACGATGAAGAAATCACCAAATTACGGATTGATTTTGAAAGACAAGTACGAGAAATTGAAGGAA
>TU81557
aggtTTACAAACAGAAGGTGAAACACTTACTATACGAACATCAGAATAGCATCTCGGAGCTGAAAGCTGAGGGGGTTGTGTCTATGAAGCTGAGTCAGAAGGAGCAGATTGAGAAGGAGGCAGAGTTACACAAGGGTGTGCGTACCCTGAAAGTGGACCTCAAAGAGCAGGAGCTTTCAAATGAGAATCTAGTGAAGAGCTTGAAACTGAAACACGATGAAGAAATCACCAAATTACGGATTGATTTTGAAAGACAAGTACGAGAAATTGAAGGAA
>TU81558
aggtTTACAAACAGAAGGTGAAACACTTACTATACGAACATCAGAATAGCATCTCGGAGCTGAAAGCTGAGGGGGTTGTGTCTATGAAGCTGAGTCAGAAGGAGCAGATTGAGAAGGAGGCAGAGTTACACAAGGGTGTGCGTACCCTGAAAGTGGACCTCAAAGAGCAGGAGCTTTCAAATGAGAATCTAGTGAAGAGCTTGAAACTGAAACACGATGAAGAAATCACCAAATTACGGATTGATTTTGAAAGACAAGTACGAGGTATGAGTTGATATTTGAGTTTAATAGGATCATTAGTCTTTGCACCTGATATTGCCT

Function

symbol description
gas8 Predicted to enable microtubule binding activity. Involved in cilium movement involved in otolith formation and otolith tethering. Acts upstream of or within muscle cell development and positive regulation of smoothened signaling pathway. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be active in Golgi apparatus and microtubule. Is expressed in neural tube; otic placode; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 33. Orthologous to human GAS8 (growth arrest specific 8).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020715 False 462 mRNA 0.47 3 31460314 31483706
TU81555 True 589 TUCP 0.48 6 31459502 31484470
TU81557 False 276 lncRNA 0.42 3 31483492 31484470
TU81558 False 321 lncRNA 0.41 2 31483492 31483922

Neighbor

gene id symbol gene type direction distance location
AMCG00020710 foxf1 coding upstream 40147 31413525 ~ 31419355 (+)
AMCG00020709 NA coding upstream 225878 31227122 ~ 31233624 (+)
AMCG00020707 LOC106951238 coding upstream 303663 31152401 ~ 31155839 (+)
AMCG00020704 NA coding upstream 328113 31109024 ~ 31131389 (+)
AMCG00020703 NA coding upstream 621471 30835572 ~ 30838031 (+)
AMCG00020714 NA coding downstream 11574 31496044 ~ 31503954 (+)
AMCG00020722 NA coding downstream 200659 31685129 ~ 31709788 (+)
AMCG00020723 NA coding downstream 229426 31713896 ~ 31720373 (+)
AMCG00020724 NA coding downstream 236392 31720862 ~ 31723055 (+)
AMCG00020729 wdr59,LOC107686576 coding downstream 241714 31726184 ~ 31753719 (+)
G65163 NA non-coding upstream 309741 31146087 ~ 31149761 (+)
G65067 NA non-coding upstream 757345 30700454 ~ 30702157 (+)
G65063 NA non-coding upstream 810138 30648824 ~ 30649364 (+)
G65024 NA non-coding upstream 1471374 29986565 ~ 29988128 (+)
G64957 LOC103376870 non-coding upstream 2120219 29259554 ~ 29339283 (+)
G65223 NA non-coding downstream 1113 31485583 ~ 31485902 (+)
G65246 tubb3,LOC107552791,LOC108431516,LOC108272015 non-coding downstream 80363 31564833 ~ 31566359 (+)
G65266 NA non-coding downstream 151293 31635763 ~ 31636329 (+)
G65270 NA non-coding downstream 173256 31657726 ~ 31659455 (+)
G65276 NA non-coding downstream 197644 31682114 ~ 31683154 (+)
AMCG00020708 LOC106562285 other upstream 241662 31162601 ~ 31217840 (+)
G65100 NA other upstream 688575 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 759248 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 922938 30533193 ~ 30536564 (+)
AMCG00020684 NA other upstream 1884156 29504227 ~ 29575346 (+)
G65343 NA other downstream 378913 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 609554 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 702144 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 789816 32274286 ~ 32280835 (+)
G65590 NA other downstream 1108012 32592482 ~ 32594454 (+)

Expression


Co-expression Network