AMCG00020719 (def8)


Basic Information

Item Value
gene id AMCG00020719
gene name def8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31546373 ~ 31560989 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020719
CACTACACAAATAATGCTATAATAACGCAGCCTGCACCATAGAAGCGCCAGCCACACGGTTGTGTCTTCGATGCCTGGGACCGAAATATAGTGTCGTTCACCCGCGTTTACCCGCACGGATCCGCCCCGGAGACACTGTTTCCCCCCGAACCGCAGCGCTGCCGGCCTGGATGTGCGGGGGGTGAGATGTAGCTGATGCTATGGAATATGATGAGAGACTCGCCCGCTTTCGCCAAGGCCATCTCAACCCCTTCAACAGAGAGGAAGGGGGCGGCACAGAGGACAGGGAGCCCCCACAGCATGAGGTGAAGCCGGAGATGTTCTCATCAGACACCAAGATCCCCAGCACAGACAGAGTCATGGACTTGGGGCTGGCTGAGGACCACTTCTCTCGGCCCATGGACTCGTTCGTGGCGTCGGACATCGAGCAGCTGAAGCAGGCCATCGAGGAGTGCAAGCAGCTGATCCTGGAGCTGCCCGAGCACTCGGAGAAACAGAAGGACACCGTGGTCAGACTCATACACCTCCGCCTCAAACTGCAGGAGCTCAAGGACCCAGAGGAAGACGAGCCGAACCTTAGGGTTTTACTGGAGCACCGCTTCTCCAAGGAGAAGAGCAAGAGCGTGAAGCAGACCTGTGACAAGTGCAGTGCCATTATCTGGGGGCTCATCCAAACCTGGTACACCTGCACAGGGTGTTACTACCGCTGCCACAGCAAATGCCTGAACCTCATCACCAAGCCATGCGTGAGGTCAAAGATCAGCCACCAGTCGGAATACGAGCTGAACATCTGTCCTGAGATCGGCCTTGACCGGCAGGATTACAGGTGTGCGGAGTGTCGGACACCTGTGTCACTGAGGGGCGTCCCGAGTGAGGCCAGGCAATGTGACTACACGGGCCTGTACTACTGCAGCAACTGCCACTGGAATGACAGCGCCACCATCCCCGCCCGCGTCATCCACAACTGGGAGTTCGAGCCCAGGAAGGTGTGCCGCTCCTCCATGCGATACTTGGCGCTGATGATTTCTCGGCCGGTGCTGAAGCTCAGAGAGATCAACCCACTGCTCTTCAACTTTGTGGAGGAACTGGTAGAGATCCGGAAACTGCGCCAGGACATCTTATGCATGAAGCCCTACTTTATCACCTGTAAGGAGGCTATGGAGGCCAGGCTCCTGCTGCAGCTGCAGGAACGGCAGCACTTTGTGGAGAACAATGACATGTACTCCCTACAGGACCTCATTGATATCTCTTCTGGCCGTCTCAGCTGCTCCTTGACCGAGATCCACACCACCTTCGCCAAACACATTAAACTGGACTGTGAGAGGTGCCAGGCTAAAGGCTTTGTGTGTGAGCTGTGTAAAAAAGGAGACGTGCTGTTCCCTTTCGACAGCCACACCTCGGTGTGCCATGAATGCTCGGCTGTGTTTCACAGGGACTGTTACTACGACAACTCCACTTCTTGTCCGCGATGCACCCGCATGACAGAGAGGAAGCAGTCCATAGAGCCACCCACTTCCCAGGAGAATTAATCTTTGACCCCCTCCCTGTGGCCTGCATTCTGTGTCCATACTTCTTTCTGACACCCTCAGTTTATGAACTCTGTATGGTCCTGATTTGAGGTTTATCCCGCACTTTTAGCAAGAGGTGGCATTACGACACACACTGGCTCTCAACAACCTGAACCTTTTTAATTCTCATATTGTTTTGATTCCACCACCTTCTCTTCAGACATTGGGTCTGCTAACAGTTTCAGAGCACATAGCAGATCAGCTGTTTCTCTTGGAATGTTGATGGACTTACAAGGAAGAGAAAATGGGACACTAACTGGTAATTTGAGTCCACACTGTGCACTGAAGGAAACCTGAGCACTAATCAAAGACATCCTACCTTCACTTCAGCTGTATCCTAAACTGAAATTCCAGTGGAAACCTGTAAACACCCTGCCTGAGCAGATCTCTACAGAGCAGCCCACACAGGAGATTAGTGTGACTGCTGTAAAAAACACAACCTGTTTACATCGAGGAAAACAGGTGTAACTCGCCAATGAATCTAAAAGATTTAACTGCCATTCACTACTCCTGTCTCTTGTTATTCACACTATTGAATTCACAGTAATTTAAATCCTTGTTTCTTGGTATGCAACTACAGAGGAGGTTTAAACCACAGTGATGGTTTTCTTGAGTAAAGTTATGTTtacaataagtaaaaaaaaaaattaaatgcatgaaaacaatCTAGAATTGttaatatccttttttttttagaactcGTGAAGAACAAACCATTTCTTAAAATGCTGCTAATTAAATTCTTAAATTCTACAAATGAGCAGCAAACTTTTTTTATACCATCAGCTGATTTACcaattttgcatacattttactAATTGTGTGTGGGAGTTGTATCATACCGTACACCATGGTACATGGTTACAATTTGTATTAACTTTTAATATCAGTGATGGCATCATGGGTGGAAATTCTCATTGTCTTATTAACAGAACTCTGGGAAACAGTATATCATATCTCAAAGActtaaaggaaattattaaatgtgGGAAGGcaaatgtttagaaaaatatacagtgcattCATTAAACTGTATGCTATATAATCAGAACAACAGTATAGATCTTAGAAGCTGTTATACAAattttcataaacaaatattgtaatgcAGTGTAGAGCAGGATTTCCATCTCTGGACCTGAAAAATCCATTAGGTTGTAGGTGACTTAAGCCAGTAGGAAGAGATCTTgttaattatgattaattaaatcaataagtGGTTCAATTACAGAACTGAGCCCTtgtttggaatgaaaaccagaagacactagCTTTCCTGGGCCTTATTTGAAGAACCCTTCTATAAGAACTAAAATTAATTTTGGATGTAGTctgtaaaaacatcaacaataaacaaaacacataatcTCTCTGTATATAATTACTGCTGTTAAACATACCTAAGTGAAAGTTGAAAGTTTTGTATTCACTTTCCTTTCTCCAAGTACAAAGAATAAGCACACCACACTTtgggaatgaaaatgtaaagtgtgCACTAACATTGCCAAGTCTTAATACAAAAGACACAAGGCATACTACTTAATcactttataattatttgttttaaaataatttagtgcATGGACTTCCCtcttaaacatacatttcttgGGTGTAATCCCTGTAACAGCCTTGGTTTTAAGTTGCCTTTTGTGTCATGAAtcattgtatattttctgtagtaccaaaaatatagaaattatCTAAGAGTAATGAGTCATATACAAGTCATTATGCATGAATAAAAATCCTAATGCCAAACAA

Function

symbol description
def8 Predicted to act upstream of or within intracellular signal transduction. Orthologous to human DEF8 (differentially expressed in FDCP 8 homolog).

NR:

description
PREDICTED: differentially expressed in FDCP 8 homolog isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020719 True 3332 mRNA 0.45 12 31546373 31560989

Neighbor

gene id symbol gene type direction distance location
AMCG00020716 NA coding downstream 687 31544568 ~ 31545686 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding downstream 2714 31519225 ~ 31543659 (-)
AMCG00020712 NA coding downstream 97724 31435628 ~ 31448649 (-)
AMCG00020711 NA coding downstream 113420 31426521 ~ 31432953 (-)
AMCG00020705 NA coding downstream 394401 31146087 ~ 31151972 (-)
AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding upstream 3844 31564833 ~ 31573696 (-)
AMCG00020721 NA coding upstream 33239 31594228 ~ 31594905 (-)
AMCG00020720 tcf25,LOC106562269,LOC106562272 coding upstream 45299 31606288 ~ 31632057 (-)
AMCG00020726 NA coding upstream 101648 31662637 ~ 31670494 (-)
AMCG00020725 nip7 coding upstream 162192 31723181 ~ 31725760 (-)
G65221 gas8,LOC108276428 non-coding downstream 64404 31480756 ~ 31481969 (-)
G65179 NA non-coding downstream 326629 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 328488 31212938 ~ 31217885 (-)
G65166 NA non-coding downstream 390108 31152419 ~ 31156265 (-)
G65109 NA non-coding downstream 715831 30830181 ~ 30830542 (-)
G65267 NA non-coding upstream 87635 31648624 ~ 31648851 (-)
G65297 NA non-coding upstream 150545 31711534 ~ 31711764 (-)
G65314 NA non-coding upstream 195273 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 196462 31757451 ~ 31758500 (-)
G65337 NA non-coding upstream 224526 31785515 ~ 31803792 (-)
AMCG00020713 NA other downstream 133550 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 737527 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 808397 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 1015237 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 2013256 29520191 ~ 29533117 (-)
AMCG00020746 NA other upstream 560896 32121885 ~ 32122933 (-)
G65549 NA other upstream 797249 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 993871 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 1046873 32607862 ~ 32610708 (-)
G65641 NA other upstream 1094145 32655134 ~ 32657019 (-)

Expression


Co-expression Network