AMCG00020720 (tcf25,LOC106562269,LOC106562272)


Basic Information

Item Value
gene id AMCG00020720
gene name tcf25,LOC106562269,LOC106562272
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31606288 ~ 31632057 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020720
ATGTCGACTCGGGCTGTTCGGAGGCTGAAAGGCAAGCAGAGGGGGCAAGAGCCTCTTCAACTAGGGGACCTCCATCTAGACGAGGAAGACGATGTCgcagcagaggaggaggaagagagtgtGTCGGAACCGGGCAAGAAGAGCAACAGCcggaaagcaaagaaaaacaagctgcaaaaaaacatcagcaatCTGTATGAGCTGATACACGATGCCGAGAACGAGGCGGACAAGCCCCGCACAGGCGCAGAGCCGGAGAGGTGGGAGGACCGGGACCGGGACCTCAGAGAGAAGACTGACAGCGGGGAGACCGAGAAAGGAGCTGTGCCCCCTGAGACGGACAATTCAAATACAAGTGACAAAGTgagcaagaagaaaaagaagaagaaaaagaaaaagaacattgCAGGAGATGATAAGGAGGAGGCAGTGTCTGATGACATTGACACTCTCCTGGAGACCATTGAAACCACCAACGGCCTCTCCTACCACAACCAGGGCTCCAGCAATGCTGACAGCAGGCCCCTGCTCTATGTGGAGCACAGAAATCTGAATCCGGAGACTGAGCTCAAAAGATATTTTGGGGCGCGGGCAATTCTAGGGGACCAAAGGCCaagacagaggcagagacagtTCCATCGTAGCACATGGATGACCATCTTCAAAAACACATGGCCTCGCTTCACCAGACCTGGGATTTCCATGAGCCTGGTCCAGACAAAAGATGGGGTCCAATACTACACCTTTGAACACAACAGAGACTATCAACAAATTCAGTTCAAATTCCTGGATGCGGTTGAGTCTATGGATCCAAACAACATTGtgCTTCTGCTGCAGATGAACCCCTATCATATCGACTCTCTGCTGCAGCTGTCTGATGTCTGCCGGATTCAGGAAGATCAGGAGATGGCCAAAGACCTGATAGAGCGAGCCCTGTACAGCTTTGAATGTGCCTTCCACCCCGTCTTCAGCCTGACGTCAGGAGTGTGTAGACTTGATTACCTCCGACCAGAGAACAGGGCTTTCTATCTAGCTGTGTATAAGCACATGATGTTTTTGGAGAAGAGAGGGTGTCCCCGGACGGCACTGGAATACTGTAAACTCATCTTGAGTTTGGATCCCGATAATGACCCGCTATGCATGCTGCTGTTAATTGATTTCCTGTCAATACGATCACGAGAATACGCCTTCCTCATCAGACTTTATGACGAGTGGGAGgttCATCGGAACTTGTCGCAGCTCCCAAATTTCGCCTTTTCCGTTGCACTGTCCTACTACTTCCTCAGTCTTCAGGATGACTTGTGCCAGGCAGAGAGTGCCCAGATGAAAAAGAAATCAGACCACCTCATACAGAACGCCCTGATAATGTTCCCGAGTGTTCTGATTCCTCTGCTGGACTTGTGTACAGTACAGCCTGATGCTGCCGTGTCCTCCCATGTGTTTTTCGGACCCAAAAGCCAAATAGGGCAGCCCCCCGCCCTGAACGAGCTGGTTTCTCTCTATGTGGGAAGGAACCACTCCCTGTGGAAGGACGGGGGTGTCATGGTGTGGCTGGAGGGCAATGTGAGAGAGGTACTATGCAGAGTCGACTCCAAGGACCCCCTCGTAGAAGACAGCGAGAAGAAGAGAAAGCTGAGGTATCAGAGCGCCCCCAGAAACATCCATCGTCACGTAATCCTGTCTGAGATCAAGGAAGCCACCGCCACGCTACCTCTGGAGGTGACCACTCAACCAGTGATGGGGTTTGATCCACTGCCTCCACTAGACTCAGCCATGGCTTACACCAGACCAGAGAGaacaaatcGGGGAGCATCTAACGAGAGCACCTTGTCACTTTTCTTCCGTTCTTTACTGCCAAACTTCAACCTCCAGGGCGGCCCCAGGCCCGAGGATGACCTGGAAGTGGCCCGAGCAGGTCGAGAGCTGAACCAGGAAGTGAACAGGCTAATGGTGGCCATGAGGGACATGCTGGCCAATATTCAGTTCCAGGAGCCACCCAGAGAGGACAACCCCGAGAGGGACGACGAGGAGTGGGATTGA

Function

symbol description
tcf25 Predicted to be part of RQC complex. Is expressed in lens; mesoderm; notochord; and somite. Orthologous to human TCF25 (transcription factor 25).

NR:

description
PREDICTED: transcription factor 25, partial

GO: NA

KEGG:

id description
K24970 TCF25, RQC1; transcription factor 25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020720 True 2040 mRNA 0.52 18 31606288 31632057

Neighbor

gene id symbol gene type direction distance location
AMCG00020721 NA coding downstream 11383 31594228 ~ 31594905 (-)
AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding downstream 32592 31564833 ~ 31573696 (-)
AMCG00020719 def8 coding downstream 45299 31546373 ~ 31560989 (-)
AMCG00020716 NA coding downstream 60602 31544568 ~ 31545686 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding downstream 62629 31519225 ~ 31543659 (-)
AMCG00020726 NA coding upstream 30580 31662637 ~ 31670494 (-)
AMCG00020725 nip7 coding upstream 91124 31723181 ~ 31725760 (-)
AMCG00020727 nob1 coding upstream 99200 31731257 ~ 31734972 (-)
AMCG00020735 NA coding upstream 265269 31897326 ~ 31914451 (-)
AMCG00020739 NA coding upstream 392265 32024322 ~ 32038155 (-)
G65221 gas8,LOC108276428 non-coding downstream 124319 31480756 ~ 31481969 (-)
G65179 NA non-coding downstream 386544 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 388403 31212938 ~ 31217885 (-)
G65166 NA non-coding downstream 450023 31152419 ~ 31156265 (-)
G65109 NA non-coding downstream 775746 30830181 ~ 30830542 (-)
G65267 NA non-coding upstream 16567 31648624 ~ 31648851 (-)
G65297 NA non-coding upstream 79477 31711534 ~ 31711764 (-)
G65314 NA non-coding upstream 124205 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 125394 31757451 ~ 31758500 (-)
G65337 NA non-coding upstream 153458 31785515 ~ 31803792 (-)
AMCG00020713 NA other downstream 193465 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 797442 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 868312 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 1075152 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 2073171 29520191 ~ 29533117 (-)
AMCG00020746 NA other upstream 489828 32121885 ~ 32122933 (-)
G65549 NA other upstream 726181 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 922803 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 975805 32607862 ~ 32610708 (-)
G65641 NA other upstream 1023077 32655134 ~ 32657019 (-)

Expression


Co-expression Network