AMCG00020721


Basic Information

Item Value
gene id AMCG00020721
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31594228 ~ 31594905 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020721
ATGTTTATGCTGCTGTTTGAACAAGGTGTGCTGCTGGTCACATCAGACATGATGAAGCAGCTGGACAATGTCATTGACATCATGATCTGCAGCTCAGTGGTGTCCTCACTGTCCTTCCTCAGCGCCATTGCCGCGGACCGCTACATCACCATCTTTTATGCTCTGCGTTACCATAGCATCATGACCACCCAGCGTGCTGTGGCCATAATTGTGATCATCTGGGTGACCAGCACCATCTCCAGCACCCTGTTCATCGCCTACTACACAAACACCGCCGTCATCATCTGCCTCATCACCTTCTTCTGCATAATGCTGGTGTTCACAGCTGTGCTCTACCTCCACATGTTCATCCTGGCTCATCTGCACTCCAAGCGCATCAATGCCATCCAGAAGAGCCGGCGCCAGCACCAGGCGACCAGCATGAAGGGTGCCATCACTCTCACTATTCTGCTGGGCGTCTTCCTCATCTGCTGGGGCCCCTTCTTCCTCcacctcatcctcatcctcagcTGCCCCAAAAGTCCCTACTGCACCTGCTTTTCCAGTTTCTTCAACCTCTTTTTAATACTCATCATCTGCAACTCGCTTATAGACCCCATCATATACGCCTACAGGAGCCAAGAACTCCGAAAGACTCTGAAAGAACTGGTGTTCTGCTCTTGTTGGTTCTTGGCATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004980 melanocyte-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04199 MC1R; melanocortin 1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020721 True 678 mRNA 0.51 1 31594228 31594905

Neighbor

gene id symbol gene type direction distance location
AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding downstream 20532 31564833 ~ 31573696 (-)
AMCG00020719 def8 coding downstream 33239 31546373 ~ 31560989 (-)
AMCG00020716 NA coding downstream 48542 31544568 ~ 31545686 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding downstream 50569 31519225 ~ 31543659 (-)
AMCG00020712 NA coding downstream 145579 31435628 ~ 31448649 (-)
AMCG00020720 tcf25,LOC106562269,LOC106562272 coding upstream 11383 31606288 ~ 31632057 (-)
AMCG00020726 NA coding upstream 67732 31662637 ~ 31670494 (-)
AMCG00020725 nip7 coding upstream 128276 31723181 ~ 31725760 (-)
AMCG00020727 nob1 coding upstream 136352 31731257 ~ 31734972 (-)
AMCG00020735 NA coding upstream 302421 31897326 ~ 31914451 (-)
G65221 gas8,LOC108276428 non-coding downstream 112259 31480756 ~ 31481969 (-)
G65179 NA non-coding downstream 374484 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 376343 31212938 ~ 31217885 (-)
G65166 NA non-coding downstream 437963 31152419 ~ 31156265 (-)
G65109 NA non-coding downstream 763686 30830181 ~ 30830542 (-)
G65267 NA non-coding upstream 53719 31648624 ~ 31648851 (-)
G65297 NA non-coding upstream 116629 31711534 ~ 31711764 (-)
G65314 NA non-coding upstream 161357 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 162546 31757451 ~ 31758500 (-)
G65337 NA non-coding upstream 190610 31785515 ~ 31803792 (-)
AMCG00020713 NA other downstream 181405 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 785382 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 856252 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 1063092 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 2061111 29520191 ~ 29533117 (-)
AMCG00020746 NA other upstream 526980 32121885 ~ 32122933 (-)
G65549 NA other upstream 763333 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 959955 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 1012957 32607862 ~ 32610708 (-)
G65641 NA other upstream 1060229 32655134 ~ 32657019 (-)

Expression


Co-expression Network