AMCG00020722


Basic Information

Item Value
gene id AMCG00020722
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31685129 ~ 31709788 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020722
CTCGTATTGTGCCAGTCAGGTTGGGGGAAACTGCAATGAAACGAATCTTATTACACTTTACTGTAAAATCTTGTGGGATAATACGGCGAATGAAAGCAGGAGAATACGgTCTCTGGTGCTGAATGCTGTTGTGTAGCCCTTGCCCAACCACAGGCCAGATGAGCAGACATGTCAGTTGAAGACTGAAATTCCGAGggcaggGAGCATGCAGTCTTCAGGCCACCGGCTCCGTGATGTGGAGCACCACGCTCTCCTGTCCGGGGAGGAGGATTACGAGGGGCCCCCAGGGGACGGCGAGCGAGTCTGGTTCATCCGCGACGGCTGTGGCATGGTCTGCGCCTTCATGACCTGGTTCCTGGTGCTGTATGCCGATTTTGTGGTGACCTTTGTCATGCTGCTGCCCTCCAAGAACTTCTGGTACGCTCTGGTCAACGGGGTGGCCTTCAACTGCCTGGCCGTAATGGCCCTCTCTGCACACCTGCGCACCATGCTGACCGACCCGGGTGCGGTGCCAAAGGGCAACGCCACGAAAGAGTACATGGACAGCCTGCAGCTCAAGCCAGGAGAGGTGATTTACAAGTGTCCCAAGTGCTGCAGCATCAAGCCAGAAAGAGCACACCACTGCAGTTTGGTGATTGAACTaatgctgccccccccccttccaGAGTGCAGTGACTTCTCCCCCCCGGTGACGGTCATCCTCATGATCTTCCTGTGTCTGGAGGGGCTGCTCTTCCTCACGTTCACCGCCGTCATGTTCGGCACACAGATCCACTCCATATGTAACGATGAAACGGAGATTGAGAGGCTGAAGAACGAGAAGCCCACGTGGGAGCGGAGGATGCGCTGGGAGGGGATGAAGACGGTGTTCGGCGGGCAGCCCTCCCTGCTGTGGATCAACCCCTTCGCTGGGCTCCGGCTCCGGCGCCTGCTGTCCCGCACGCGGCGGGGGGGGCCCGAGTTCTCCGTGTGAACCCCCTGTCCAGCACCACCCGGCCCCCCCGTGTTATACTGTGGCGCACCgctcccccttccctctctcctccaccccGACGCCCTCCCTGTGCCCTCACACCCCCCCTGCACCTCCACACACAGTCAGTGTAGACTTCAAAAGCGCACGAACGTGGGGCTCTCCTGTGTCTCGCAGCGACCGGACTACTGCTGGGGCTGCAGGGATCCTGAGCGAGGCTCCAGTCTGGCCATATGGGGGAGATTGTTGGCATTTCTGTTGCGCTGCTTTGACGGCAGTACAGTTATGTTAATccacagtatttgttttgttttcagggcagggcatttttattttgttttgcttttacaaTCACCCAACTAAGTGGAAAGCAACTCATCTAAAAGCCTAGCGAAAGGGTTCGTGAGGTTATATACTCTGGTGTGAAACACTATCCCAGATATAAAGGCTGCTGTAGACTTTTAGATCTGTTCTCTGTCCTGGGGAAAATTGCTGGATCTTGCGTGGAGAGAGAAGCTACAtccatctcttttttttttttttattacttttttttttaaatatagatctCTTGTGTTTTCATATCAGTGCTGCTTGCTTTCCTTCTTTCTCAGATTGCATGTTCTCTGCCAGGACTGGGAGAGTAACACACAAGAAAGGATATGGCAATACAGGACAGGGTGTGGGTCTATAGTATAACATGTCCTGCCTGGGCCAGTGGTGCCAGGAAGCAGGAAGAGAATGGCTGAAGAAACCACTAATGTGATCCTCTCCCTGGAGAGACCGTAAACCGACATGCTTCCCATatgtcatacattttatttttttatttgagcccTGCAAAGGTGTCATTGTTTGGAGCTTATCCATAGGAGGATCATTTGAAATACCACTGTGGTGAAACGGAATGAcaatgtatttaagaaaaagaGAGCAATCACTTTATTACTAATCTCCACCTGTCTCTTCCccattttcttgcatttttttgatcatgtattattatgtattgattgtctgttaaaagaaaaaagacaaattgcTGGTTGCCCAATACTTCCTGGCTACCATTGATTATGTCAGTAGTGTGGGAAGAGGTACCCAAATTCTAGATTCAATCAGACTGCTATCTCTCTACATACAAACTCCCTTAATGCAATTATAAAGTGTGTGCATCTTAGTTTGCTCCTTAAAACAAATGATGCCAAACTTGAAATCAATTGTTCGATGAATTAGAGTCCCCCCAAGTATGTGGGGTGCTCAGTATAAAGGTGGAGTTATAGAAGAGGTATAACTATACACCGATCAAGCCATTCAAGAGGGAAAACTGGCGATATGCACGGGGGCATTATAAAGTGGGGGTGTGGCATTAATAGAGCCGCTCATTTATCTTTACCAAGCATTGCCTCTCTGAACAAGTCTCTTTTTATTGCGCTTTCCCTGTAGATTACAATGAGGGTTGCAATACCTTGGCCAAAATAAAGGAACTCAGTATTTATTTCAGGTAATTAAGTTAACAATGGTTCTTTATAAAAAACTTTGATCTTGGAAATTGATCTCAATCTTGGCTGTCTGTTTTTGGGAAGCTattataagattatatatattttttcttaattattattttaaacttcttGTTGGCTGTGGCAATCCAGGATGCACTACCGTTCATACAATCATCATATCTCTGGGATGCATATATGCTTTTCCGCTTCCAAGATGAATTGACTTGTGTATCATTACTTTAACAAAACCTTGTAACAGTGTCTCTTCATGCACTGTAGAACTGCACACAAGGCCTCTACACCAGAATTGACTGACAAGGGCAAATCCGTGGCAGTTATGGATGTGCTAAAGGAATCAtatgtaaaacaacaattacaattctgcagattgttatttttcccccctccccaaccATAATGGCTCAGAGTCTGTGCTCTACTACATAAATGACCGGAAAGATTTCCAGTATTTCTCAAttggtatgtatatatagaaagtatatacacactttattaccaaaagtattgggacaatAGATTAAATGCAGACAGCTCACAATGTGTTTAATAGACTTTTAATATATGGCCAGAGTTCTGCTGTGCTATTCCTCCAGCCGTGCACATACATAGTGCGGAGAAGTTTATGATCTCTACCTGCATTGCTCTGCCACCTCATCCAACATGTGTATTGAGGGTTTGAGATCAGGGCAGTGAATCAGTGCCATTACATTTATTCTATCCTATTCTTCATGAACCCACTGTATTCAGATGCCAGGCTTCTGAAAAGGTACATTATAGTGTTGGTGTTGGCCATTAGATTAAAAGGTTATCAAGCCTGGCAGATCACTTTTCACCAGATCGGCTGGTCATAGTGCCcttcacaaaaaacaacccCTGCACGACCTACCACAATCCATAATGAAATGCTTTATTGTAGAAGGGAAGTCTGTCCCATCACTTATGGAAATATAGTTTGTGTACATATGGATGATTTATTACTGGAGGatttagattgtttttattaataatattgtttttttaagcaatatttgtgttttaaattgtctttATAATGTGTAGTCCTTTTGCATAATAAAGTTATTAGTTTACAATGATGTATGGTAAGCCTATATGAAAACTACGAGCAGTTCAATCCAGTGTCTTCGGATACccaagggaaaaaacaaaacaaaaactgggaAATCACATGTCCATTAGAAATCAGATCTAAGCATTCCCCTAGTGAAAGTGTAAGACAGAACTATTTCTCTCCCTGTGCACTGCAGCCAGGCTTTTTAATTGCTAATCTGGGAGTGCCTTCCCTTGATGATGATGTAAAAGATATGgggtttaaaacaaattatattctgATCTAAAATGGTCTCTGTAACAGATGAAAGACATGAGGATCAAGCTGTATAGCAGCATGtctgttcatttattatttatttaatatttaactggAATATGGGGAATACattagattaaaataatgtatttttgtgatgCTGTATTTCCATGTAGCATTTTACAAGATTGATCAGCTGCAAATGTGTGAAACTCCCATAACAAAATGGCTTGATGAATCTCATAGTGAGGGATACAGTTTACTTACACAAGACTGGCGCTATGAGAGATTGGTGCTCAAGCcctctttttttaatcatatactGGACTGACAGATTGCCAGATGAAAACATTTGTGGGGTTTCGCATGATTGGAGTTTTCAAATGAGAGcatggctttctttttttcatttaaaaaaacactgcacagtGTATGTAATCCAGTCCCACATGTTATGAGCTTTTAGGATGTACAGTATTTGAGGGGGATCTTCTCAAGGATCTAgattaaaaaagcacaacaaaccTGCTGGATTGAAGCATTGTAAATGCTTTAGATACATGTTTGGCTTTACACAGAAATCTTTTCCCAGTAGCCACAGTACCCTCTtgtatttttccaaaacaaataaataaatgcatacttGTGTTGTACAGTTTTAAATTACCTCCTAAAGGGATGTAAAGAGATCAAGATTTAATCACTTACCCCTTTTTAAATAGATTGATAGGCAGAAATGTTATACTTTGGTTTGGTAAATGAGTCCCAATctgattatattataaaatatcatATTCTGTAGAAGCTTATACTCTGTACAGTAAAAGTAGTGCTGAGAAGAGCATAGCtatttttgtgtcattttttccagttattttaaaaatatgaaaaaggaagacaataaaatgcattgctttcCTCAGTATTCTTTTATATACCTCTGTTTTGAGATTATCATGGTTGTATTCCAAGGGAGAAGCAACTGAAAACAGtgcttacaaatatataatttgagtACTTTCATATGTAATCAGAATCTGAAATGTATGCCAATTAGCTCATAGCTTAGTTCAAGTTCTTAAGATGGTGCTACAAGGTTTTTGTCTCTTTAATGGAGCAGTTTATATGGTCTGATTTTTCctgttattcttatttattgcattatttaattatctgtgTACTAGGGTAGCCTCAGCACTTGTGTACACATTTCACCTTAGTCTCACTGGTACAGTAATTACAGCTCCTGGGAAACTCTTGCAGTGAAAAACTGGACACAATAATTTCATAACACACTTTCACAACATTAAAAGCCTTCCCCTTTGAATTTCCTCTCATTTTGGTTACTGGATACATTTCAGATGCTATTTCAAAgtaatgacaaattaaaaacaggaaaaccatAAAAGGTAATCAAATAGAAGACATGCAACAGAGGACTGTAATAAATAAGAACTGATTTAACAGGAAAACATGAGTACCATAATCTTCTTTATTTACTGCTTTATAAAAGCCTCTGCCAAAGGGTACCTCTCTGTTAAGGGATGGGCAGGAATCACTGTGGTCCTGATGTTTTGTATGGAACGATATGTATTAGCTTTAAATGTCTaggaagtaaaagaaaatgtagattATAATGGATATGGAATGGTTAACTTTtactctttttctttgtttgtactATTCTAATCAGTGGAAGCCTCTGCAGTTT

Function

GO: NA

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020722 True 5537 mRNA 0.41 6 31685129 31709788

Neighbor

gene id symbol gene type direction distance location
AMCG00020714 NA coding upstream 181175 31496044 ~ 31503954 (+)
AMCG00020710 foxf1 coding upstream 265774 31413525 ~ 31419355 (+)
AMCG00020709 NA coding upstream 451505 31227122 ~ 31233624 (+)
AMCG00020707 LOC106951238 coding upstream 529290 31152401 ~ 31155839 (+)
AMCG00020704 NA coding upstream 553740 31109024 ~ 31131389 (+)
AMCG00020723 NA coding downstream 4108 31713896 ~ 31720373 (+)
AMCG00020724 NA coding downstream 11074 31720862 ~ 31723055 (+)
AMCG00020729 wdr59,LOC107686576 coding downstream 16396 31726184 ~ 31753719 (+)
AMCG00020728 cfap20 coding downstream 44524 31754312 ~ 31758498 (+)
AMCG00020731 NA coding downstream 49112 31758900 ~ 31769036 (+)
G65276 NA non-coding upstream 1975 31682114 ~ 31683154 (+)
G65270 NA non-coding upstream 25674 31657726 ~ 31659455 (+)
G65266 NA non-coding upstream 48800 31635763 ~ 31636329 (+)
G65246 tubb3,LOC107552791,LOC108431516,LOC108272015 non-coding upstream 118770 31564833 ~ 31566359 (+)
G65223 NA non-coding upstream 199227 31485583 ~ 31485902 (+)
G65290 NA non-coding downstream 1757 31711545 ~ 31711765 (+)
G65332 NA non-coding downstream 75029 31784817 ~ 31785133 (+)
G65413 NA non-coding downstream 383183 32092971 ~ 32093171 (+)
G65437 vdac3,LOC107671013,LOC107559564,LOC107754399 non-coding downstream 472574 32182362 ~ 32268201 (+)
G65450 NA non-coding downstream 524362 32234150 ~ 32253861 (+)
AMCG00020715 gas8 other upstream 200659 31459502 ~ 31484470 (+)
AMCG00020708 LOC106562285 other upstream 467289 31162601 ~ 31217840 (+)
G65100 NA other upstream 914202 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 984875 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 1148565 30533193 ~ 30536564 (+)
G65343 NA other downstream 153595 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 384236 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 476826 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 564498 32274286 ~ 32280835 (+)
G65590 NA other downstream 882694 32592482 ~ 32594454 (+)

Expression


Co-expression Network