AMCG00020723


Basic Information

Item Value
gene id AMCG00020723
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31713896 ~ 31720373 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020723
CCCCGACCTCCCACAAACCCTCTTAAAGAAACATGGCGGAAATTGCTAACAGACAGGATGCTGggtctcaaaacaaaacaagtgatCGCCAGACCTGTACACAAGAGCCCTGGCGGCAGAGTGACCTGGAAAGTGTGGTGACCCGCTGGGTGGTGGATTATTACGTCCACTGCGCGCTCGGGGCTTTTCGCGATGGGCTGTATAAAGACTTCTGCGAGATCAGGGATGTACTGCAGAGCTTGCTGGTTCGGCCCGTGGAGAGCTCGGGGGACATGAACACGAAGCTGCGAGTCATGCAGTTCCTGTCCCGGGTTAATGATGGAGAGAAGCTGGGTTATGTGTTTGATGTGGATGGTGCCCTCACTCCCCTGGAGTCGGCCCTGCGCCTGCTAGGCTGCATCGGTGAGGAGGCAGTGACCGTGTGTATTAAACAGAAGGAGTATGAGAAGGCCAGCAGGATACTGACAAGACATTTCCCTAAGGGCGTGAATGCAAAGAAAGCCCTCTTCATGGGCCTAGTGGACCAGAAGAGCAGTGTCCACTCGGCACTGGAGCAGGTGACCTATGGAGAATTCTGCTTGGAGATGTTCAAGTTCGCAGAGGGTTTACTCGTGGACTCGGAGCCTTTTCTGCACAAGacCGCAGAAAAGATCCTGACCCTTAGGTGCACGTTGGAAGACTGCAGCGCTAAGCCAtcgagagagaaagggaggttCTCGGACGGGCCTGAGAGGACAGTAACTCCTGTCACAAGGGACCCTCCATGGACCACTTTCAGCCGCTCAGTTCTCGCAGTGGCCTACGCTGCAAAGGCTGAGGAGCTGGGGATCAGTGTGATGTTTGAGGAGCTGGAGCAGACCGACCTGGATCCCCCCCCACCGGATCAGAGGCCCGTTTCCCTTCACCTTTCCCCCTGTCGCAAACTGGGCTCCCCAGCTGGAAAAGGCCCCCACTCTGCTCATCCCAGGCAAAAACCCCACGCAGAGGAAGTCCCAGAGTCCTCCTCAAATTCGGGCATTCTTGGCCCGGTTTCCAGTGCAGACGAGACGGCCCACACACCTGGCGATTCAGGGCCAGCCAGGGCGGCGCCCCACGTAGAGGAAGGGTCTGTTATGAGAGAGAGCCCACAAGCCCCCCAGAGTTCTGACAGCCCCAGAGAGGGGTCCAGGACAGACTCCCCAGCCTCGAGAAAGTGTGCAGTGATCACAGTGGCCCGGCTCATCATGGAGGAGGACAGCACTCAGACTGGGGAGGAGAGTTCAGGCAGCCAGCCGGAGCCCATGAGCCCCCCGGCCCTTGTGGACTCCAGCCAAGACTCTTCTGATGACTCTGATGAAGCTGTGGAGAAACATATATTTGCTGGTGGCCAGCGTGAGGGCCAGTCCTCCAGGAAAAGGCGCAGGATATTGGATGtgaaggaagaggagaaggacTGCTGGGAAGAAGAAGATTACTTGTTCAGCCGTGATGCCAATGGAGCGACTTCAGATGGAGAGAGTGTTATTAGCCGCAGTTCAAAGAAGAGGTGGACCGTGGAGGAGAGTGAGTGGATCAAGGATGGCGTATTAAAATATGGAGAAGGCAACTGGAAGTCAATACAGAAGAACTTCCCCTTCGTGGGGCGGACCACCGTCAATATCAAAGACCGGTGGCGGACCATGAAGAGACTAAAGATGGTGTGAGAGGCCATGGAGGGTCTTCATACAGACCTTCATAGAGACAGTCAGACGGTGCCATCTCCTGTGTCTGGAAAGGCCTTCTTCCAGGGTCCTTCTGAAATCATTTCAGCATTAAAATCACtcgtgtttttgtttaagaCTCAAGATGAGACTTGTCTTCCAGTTTTctggtttatttacattttgtcatgGTTATGTTTATAGTAAAGCTGCATTAAAGCTTTAATGGTGATACAGATTGATTACCTGCAGATATGTTACACGTTTGTATGGATGTCCTTATCCAGCATTGCATTTAAACTAGAAATCCTCCAACACGTAATCTTCTCATTATTTAATATCAACAAGACGAAGgagtaacaatgtttttttaactgtaaatgCAGTGGAAGTTTTGAAATTTTTTTACaaactgtataaattaataaaatgtattctgtatatattcatata

Function

GO: NA

KEGG:

id description
K11111 TERF2, TRF2; telomeric repeat-binding factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020723 True 2132 mRNA 0.51 11 31713896 31720373

Neighbor

gene id symbol gene type direction distance location
AMCG00020722 NA coding upstream 4108 31685129 ~ 31709788 (+)
AMCG00020714 NA coding upstream 209942 31496044 ~ 31503954 (+)
AMCG00020710 foxf1 coding upstream 294541 31413525 ~ 31419355 (+)
AMCG00020709 NA coding upstream 480272 31227122 ~ 31233624 (+)
AMCG00020707 LOC106951238 coding upstream 558057 31152401 ~ 31155839 (+)
AMCG00020724 NA coding downstream 489 31720862 ~ 31723055 (+)
AMCG00020729 wdr59,LOC107686576 coding downstream 5811 31726184 ~ 31753719 (+)
AMCG00020728 cfap20 coding downstream 33939 31754312 ~ 31758498 (+)
AMCG00020731 NA coding downstream 38527 31758900 ~ 31769036 (+)
AMCG00020730 NA coding downstream 52910 31773283 ~ 31783334 (+)
G65290 NA non-coding upstream 2131 31711545 ~ 31711765 (+)
G65276 NA non-coding upstream 30742 31682114 ~ 31683154 (+)
G65270 NA non-coding upstream 54441 31657726 ~ 31659455 (+)
G65266 NA non-coding upstream 77567 31635763 ~ 31636329 (+)
G65246 tubb3,LOC107552791,LOC108431516,LOC108272015 non-coding upstream 147537 31564833 ~ 31566359 (+)
G65332 NA non-coding downstream 64444 31784817 ~ 31785133 (+)
G65413 NA non-coding downstream 372598 32092971 ~ 32093171 (+)
G65437 vdac3,LOC107671013,LOC107559564,LOC107754399 non-coding downstream 461989 32182362 ~ 32268201 (+)
G65450 NA non-coding downstream 513777 32234150 ~ 32253861 (+)
G65452 LOC106568273,LOC106562702,LOC104948043,LOC105031130,LOC102213975 non-coding downstream 548253 32268626 ~ 32269457 (+)
AMCG00020715 gas8 other upstream 229426 31459502 ~ 31484470 (+)
AMCG00020708 LOC106562285 other upstream 496056 31162601 ~ 31217840 (+)
G65100 NA other upstream 942969 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 1013642 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 1177332 30533193 ~ 30536564 (+)
G65343 NA other downstream 143010 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 373651 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 466241 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 553913 32274286 ~ 32280835 (+)
G65590 NA other downstream 872109 32592482 ~ 32594454 (+)

Expression


Co-expression Network