AMCG00020725 (nip7)


Basic Information

Item Value
gene id AMCG00020725
gene name nip7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31723181 ~ 31725760 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020725
TAGTTTACCCACGTGTTGTCGCGCAGTGTGTTTGGGGTTAGTGCATTTTGTAACCATACGtagaatattataaaatataaagatgcGGCCTCTtacagaagaagaaacaaaaacgaTGTTTGAAAAACTTTCGAAATATATCGGAGAGAATATTAAGCTCCTGGTTGATCGACCAGACGGGACCTATTGCTTCAGACTGCACAACGATCGTGTGTATTACATAAGTGAAAAAATCCTTAAACTGGCAACAAACATCTCTCGGGAAAAGCTTGTGTCTCTGGGAACATGCTTTGGGAAGTTCACCAAAACTCAGAAGTTTCGCCTGCACATTACAGCTTTAGACTTCCTGGCTCCCTACGCAAAGttcaAGGTATGGGTGAAGCCCGGAGCAGAGCAGTCATTCCTATATGGGAACCACATCCTGAAGTCAGGCCTGGGCCGGATCACAGAGAATACCATCCAATACCAGGGGGTGGTGGTGTACTCCATGGCAGATGTGCCACTGGGATTCGGAGTGGCAGCTAAATCCACGCAGGAGTGCCGACGGGTGGATCCCATGTCCATTGTAGTGTTCCACCAGACGGACATTGGGGAATACATAAGGAGCGAGGACACACTCACATAAAGCAAATCGACATCCATCTTGAACACAGACTGTACAGAGGAGCAGGGATGGGGTGGGGCAGCCCCTTCCCGAAAACACACGCCCTCAGCAACATGAAAAACAGAGTGCTGCCTTTCCCTTGCATCGGCGAGGATCCCTGGACCGAGAACTGCGGagcccaccaccacccccctgCCAGCAGAGGTCCACAACAGTAATGGCCACAAATACTTACAAAAAAAGTTTCTGAAAGTTGAAgacatgcatttgtgttttttgtaaatcacatttattcttgttaattgaaaatattaaacatatttggaGTTAAATAAGCAGTTCTTATTTGCAATCATCATTCAGTAATCGCCAAAAGGGAATGTGTAAGCGCTGTCTAGGTTCATAGGTTCAATCTTTTCTTCTCTAGAACAGTGGTTTTGAAAAAGGTCAACCTCTAGGTTTGCTtatttaattctgaaacacAAGCATTTTAGTGCACTTGGGAAATGTGTC

Function

symbol description
nip7 Predicted to enable RNA binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome assembly. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; immature eye; liver; nervous system; and segmental plate. Orthologous to human NIP7 (nucleolar pre-rRNA processing protein NIP7).

NR:

description
PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog

GO:

id name namespace
GO:0042255 ribosome assembly biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020725 True 1117 mRNA 0.45 5 31723181 31725760

Neighbor

gene id symbol gene type direction distance location
AMCG00020726 NA coding downstream 52687 31662637 ~ 31670494 (-)
AMCG00020720 tcf25,LOC106562269,LOC106562272 coding downstream 91124 31606288 ~ 31632057 (-)
AMCG00020721 NA coding downstream 128276 31594228 ~ 31594905 (-)
AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding downstream 149485 31564833 ~ 31573696 (-)
AMCG00020719 def8 coding downstream 162192 31546373 ~ 31560989 (-)
AMCG00020727 nob1 coding upstream 5497 31731257 ~ 31734972 (-)
AMCG00020735 NA coding upstream 171566 31897326 ~ 31914451 (-)
AMCG00020739 NA coding upstream 298562 32024322 ~ 32038155 (-)
AMCG00020745 NA coding upstream 345441 32071201 ~ 32083067 (-)
AMCG00020744 wdr45,LOC102779567 coding upstream 378970 32104730 ~ 32109416 (-)
G65297 NA non-coding downstream 11417 31711534 ~ 31711764 (-)
G65267 NA non-coding downstream 74330 31648624 ~ 31648851 (-)
G65221 gas8,LOC108276428 non-coding downstream 241212 31480756 ~ 31481969 (-)
G65179 NA non-coding downstream 503437 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 505296 31212938 ~ 31217885 (-)
G65314 NA non-coding upstream 30502 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 31691 31757451 ~ 31758500 (-)
G65337 NA non-coding upstream 59755 31785515 ~ 31803792 (-)
G65397 NA non-coding upstream 332558 32058318 ~ 32061297 (-)
G65465 NA non-coding upstream 460722 32186482 ~ 32187711 (-)
AMCG00020713 NA other downstream 310358 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 914335 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 985205 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 1192045 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 2190064 29520191 ~ 29533117 (-)
AMCG00020746 NA other upstream 396125 32121885 ~ 32122933 (-)
G65549 NA other upstream 632478 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 829100 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 882102 32607862 ~ 32610708 (-)
G65641 NA other upstream 929374 32655134 ~ 32657019 (-)

Expression


Co-expression Network