AMCG00020748


Basic Information

Item Value
gene id AMCG00020748
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32274286 ~ 32280835 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020748
ATGTGTGAAGGACTGTCCCGGATCTCGGGGCCCATCCCCCCGGACCCCTCGCTGTTCCCCGAGCTGTACCGCCGCCCTGCTTCAGCCCGTGGGCGTTTGGAGGGCAATGATATGAAGCTGGCCCTGCTGGCCGGCCCACTGGCCCCTGACCCCACCCTGCACCCTGGCTGCTACAGTGCTCGGGCCCCCCCTCCGCCCCGCGTGCGCCCCAACGCCACACACATCCTGGAGAGGGGTCAGCGGGGGGTCGTGGGGAGCCTGCTGCAGCTGGAGGGCATCGCCTTGGACCCCGGACCACCGAAACACAgGAAGGAGGTGCGTGACCATGGCAAGGAGAACGTGCGCCGGCTCCGTGAGATTCAGCGCCGCTGTCGGGAGCGCGAGGCTGAGAGGGGCGGGGTGGCCGCTGGGCCGGTCCGCGCGCTCTGGAGGTCCCCCAAATACGACACTGTGCCCTCAAAGGTCATGAGCCAGCTGCAGGCACACTCGCGCTGTGGCAGTGCCGGCCCCCCCCCGCGCCGCCCACCCTCCTGCCCTGCCTCCCCCCGCCgcccctccacctccccctcctcacCCACCTCCCCCCCCCGCGCTCCCTCCCCCTGCCCCGTCCCTGCAGAGAGCGCTGAGATGGTCGTGCGGGGGAGGTCTGTGGACTTCGTGAGACACAACGCACTGGCGGCGTTCCGGGGGCGCTCCCGCTCCTGCGACCCAGCCGAgcgacagaggagagagagagagagagcgcccAGCCCCTCGCAGCCCCGCGGGGTCGTCCCCCAGTATCTGCAGGAGCGCAAGCAGCAGTGGCgtcaggaggaggaggagaagaggcgGAGTGCGCCGGACCCCTCTGTGCCCCCCGGACACACACAGCTCCCTGAGGTGGAGAGACAGGAGACACTCAACTCACTGAAAGAGaccCAGCGCTCTCTGGTGCGGGAGCTGCTGTCCCTGCCGGTCAGAGCTGACACTCTCAGTATGCAGAGCCGCCGGGCTGAGCTGGATAGGAAGCTGTCGGAAGTGGAGGAGGCCATCAAGGTCTTCTCCCGGCCAAAAGTCTACATCCGGGTCGACTCCTGATTCTGCGTCAGACACAACCGGGTCGGGTCAGATGTGATCACAGTGTATCTAAACAGACATTGCAGTTTCATTGAATGCCTGTCCCTcttcatgtatatttatttatttgagtttagTTATTGTCCTTTTCCCTGTGTCTTTCACCTCCATGTGTGCGGCAGGAtgctctgctctctgtgtggtGTTGCTCAGGGGCCCAGCATGCTGGCTGTCCTCCGCAGAGTGGTGATGAAGTCCGTACCCCCCCCACAGCacgtgtgtgcatgcatgcatgtgttagtgtgtgtttatGAGTTTGAGTTATTATTAagtaagtcgccctgggtaagGCTGTCTGCTAATCAATAttgtaatgatgataataataataattatggcCTTACCAAGTTCTTacgaaaacacatttttcacaaaaacatgaTCACAGTGCAAACATACAGCATCCGTCCCCAGGAATGTGAGCTGCAGTGGGATGGGTGCGGTTCCcgggctgtgtgtgtctggggtgtgtgttgctgtgtgttttgatttgattcttCTGGAAAATACTGTATGATAACGGTCAGGCCTGTGTACAATGTAGCTGATAGTGTTTAAATAGATGGCCGTGGTTCCTGTAAAGTCCATCTCTCTTTAAGACACCGGGGTGAAGggctgtccagtccagtccggCACATTCCAGTATAACAcagatttttaaacaaaaaatgtatatatgtaggtGAATCACTAAAGAGAAAAGTTGTTCATTAACACAAAcaccattacaaataaaattaaataagaa
>TU81856
GTCACCAGAAGCTGCGGGGTTGCCATGGGGATGCGTACCCGCTTGGGGGAAACGTGTGCACTGCGTCATCAGTTTGCGTTGCTCTGCTCGTCAGTTACCTTTGCGGTTGCTGTCGGACTTAATAAGCCCCCAGCGATCCCGTGTGTCTGAGTGGAGGATGTGTGAAGGACTGTCCCGGATCTCGGGGCCCATCCCCCCGGACCCCTCGCTGTTCCCCGAGCTGTACCGCCGCCCTGCTTCAGCCCGTGGGCGTTTGGAGGGCAATGATATGAAGCTGGCCCTGCTGGCCGGCCCACTGGCCCCTGACCCCACCCTGCACCCTGGCTGCTACAGTGCTCGGGCCCCCCCTCCGCCCCGCGTGCGCCCCAACGCCACACACATCCTGGAGAGGGGTCAGCGGGGGGTCGTGGGGAGCCTGCTGCAGCTGGAGGGCATCGCCTTGGACCCCGGACCACCGAAACACAgGAAGGAGGTGCGTGACCATGGCAAGGAGAACGTGCGCCGGCTCCGTGAGATTCAGCGCCGCTGTCGGGAGCGCGAGGCTGAGAGGGGCGGGGTGGCCGCTGGGCCGGTCCGCGCGCTCTGGAGGTCCCCCAAATACGACACTGTGCCCTCAAAGGTCATGAGCCAGCTGCAGGAGACGACCCCCCCCAAGAAGCCAGAGTGTCAGAACTTCCTGAAGGCACACTCGCGCTGTGGCAGTGCCGGCCCCCCCCCGCGCCGCCCACCCTCCTGCCCTGCCT

Function

GO:

id name namespace
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020748 True 1870 mRNA 0.58 7 32275039 32280835
TU81856 False 743 TUCP 0.67 5 32274286 32278972

Neighbor

gene id symbol gene type direction distance location
AMCG00020750 ikbkb coding upstream 10579 32254128 ~ 32263707 (+)
AMCG00020747 ap3m2,LOC108255511,LOC108439675,LOC103397469 coding upstream 42134 32223206 ~ 32232152 (+)
AMCG00020741 NA coding upstream 154708 32110530 ~ 32119578 (+)
AMCG00020740 NA coding upstream 176972 32095411 ~ 32097314 (+)
AMCG00020738 pdcd5,LOC106587385,LOC107550119 coding upstream 203033 32061412 ~ 32071253 (+)
AMCG00020749 NA coding downstream 746 32281581 ~ 32289339 (+)
AMCG00020754 NA coding downstream 29655 32310490 ~ 32314382 (+)
AMCG00020756 NA coding downstream 65827 32346662 ~ 32355829 (+)
AMCG00020755 NA coding downstream 77023 32357858 ~ 32362662 (+)
AMCG00020759 NA coding downstream 169342 32450177 ~ 32454833 (+)
G65452 LOC106568273,LOC106562702,LOC104948043,LOC105031130,LOC102213975 non-coding upstream 4829 32268626 ~ 32269457 (+)
G65437 vdac3,LOC107671013,LOC107559564,LOC107754399 non-coding upstream 6085 32182362 ~ 32268201 (+)
G65450 NA non-coding upstream 20425 32234150 ~ 32253861 (+)
G65413 NA non-coding upstream 181115 32092971 ~ 32093171 (+)
G65332 NA non-coding upstream 489153 31784817 ~ 31785133 (+)
G65503 NA non-coding downstream 26603 32307438 ~ 32307719 (+)
G65534 NA non-coding downstream 163046 32443881 ~ 32444644 (+)
G65579 NA non-coding downstream 282595 32563430 ~ 32585714 (+)
G65594 NA non-coding downstream 348888 32629723 ~ 32686320 (+)
G65670 NA non-coding downstream 598264 32879099 ~ 32882118 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other upstream 84905 32186614 ~ 32189381 (+)
AMCG00020742 NA other upstream 179100 32094024 ~ 32095186 (+)
G65343 NA other upstream 409580 31863383 ~ 31864706 (+)
AMCG00020715 gas8 other upstream 789816 31459502 ~ 31484470 (+)
AMCG00020708 LOC106562285 other upstream 1056446 31162601 ~ 31217840 (+)
G65590 NA other downstream 311647 32592482 ~ 32594454 (+)
AMCG00020783 dock5,LOC106585561 other downstream 427098 32707933 ~ 32744735 (+)
G65691 NA other downstream 665896 32946731 ~ 32989445 (+)
G65705 NA other downstream 827038 33107873 ~ 33108426 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other downstream 1673971 33954806 ~ 33960582 (+)

Expression


Co-expression Network