AMCG00020767


Basic Information

Item Value
gene id AMCG00020767
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32554860 ~ 32559096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020767
ATGGGGATGACCGACGTGCTGGAGATCGGGGCCGGCGAGCTGGCGGCGACGCTGCAGAGCCCGGGAGACGGGTCCTCCTCCGGGGGCAGCTTGGTCCTGGACTGCCGGCCCTTCCTCTCCTATTCCCGGGTCCACGTCTGCGACTCCCGCAACGTCAACTGGAACTCCATGCTGAGGCGCCGCTCCAAGGGCTCGGCGGTCAGCCTGCAGTGGCTGGTGCCGGACCGGGCGCTGCTGACCCTGCTGCGGTCGGGCCGGCTGGCCACCCTGGTGGTGCTGGACGAGGGGAGCCGCTGCCTGGCCGAGCTGAGAGCGGAGAGTCTGGGCAGGATGCTCCTCAGCGCCCTGAGCGCAGAGCTGGGCCCCGGAGAGACGCGCGTCTGCTTCCTGCGAGGTGGCTTCGAGGGCTTCTTCTCGCTGTGGCCGCAGCTCTGTGACGGCCCAGTGGAGCTCCTCCCCTTCCTGTTCCTGGGCAGCGCTCGTGACGCGTCGCAGTGGGAGGGGCTGGCGGGGCGGGGCATCACGGCGGTGCTGAACGTGTCGTCGCGCTGTCCCAACGTGTTCGAGGGGCGACTGGACTACCGCACCCTGCGCCTGGAGGACAGCCTGGCCACCGACCTCACCCCCACCCTGCCTCATGCCATCCGCTTCATCGacTCTGTGCGGGAGCGTGGCGGCAGGGTGCTGGTGCACTGCCAGGCGGGCGTGTCTCGCTCGGCCGCGGTCTGTCTGGCCTACCTGATGGAGTCCAGGCGGCTGCCCCTGGCCGAGGCCCTGGCCTTCGTGAGGCAGCGCCGCGCCGCCGTGGCCCCCAACCTCGCCTTCATGGGCCAGCTGCTGCAGCTCGAGACCCAGGGGCTGTGCCACTGA
>TU82054
TTCTCGCTGTGGCCGCAGCTCTGTGTGAAGTCCCCGGGCCTGTGTGGGAACAGAGACCCCGAAACCGTCTGGACTGAGGAGACGCCCCCGCTGTATGAGCAGGACGGCCCAGTGGAGCTCCTCCCCTTCCTGTTCCTGGGCAGCGCTCGTGACGCGTCGCAGTGGGAGGGGCTGGCGGGGCGGGGCATCACGGCGGTGCTGAACGTGTCGTCGCGCTGTCCCAACGTGTTCGAGGGGCGACTGGACTACCGCACCCTGCGCCTGGAGGACAGCCTGGCCACCGACCTCACCCCCACCCTGCCTCATGCCATCCGCTTCATCGacTCTGTGCGGGAGCGTGGCGGCAGGGTGCTGGTGCACTGCCAGGCGGGCGTGTCTCGCTCGGCCGCGGTCTGTCTGGCCTACCTGATGGAGTCCAGGCGGCTGCCCCTGGCCGAGGCCCTGGCCTTCGTGAGGCAGCGCCGCGCCGCCGTGGCCCCCAACCTCGCCTTCATGGGCCAGCTGCTGCAGCTCGAGACCCAGGGGCTGTGCCACTGAGAGAGAGCATTCAGAGACCGCTGCGAGGGGCTGACTGCCAGTTTCTGAACCTCCACACTCTGTCCCCAACAGTAACACTAAACTCTTGTACTGGGTTCCTACCTGAGCCAGTGAGGCATTAATAGAGCTCCTGTAATGTGGTCTGTTCCACAGCCTACACAcacctgattttatttttgactgTGAATCAAGAGCCTTAAAACTTCAGATTTGGTGTTTGTGTTGCCGCTGTGCTCAACTCAGCTTCACAGATAAATGCCAACCCTGAAACGGCACTTAAGTAgttgtcaatatatatatattgtgtgtgtgtatatatatatatatatatatatataataatccaaATAAGCAATTTTTGTCCAATAAAGTGCTCCATTAAGCAATTATAGTTCAATACAGTACTACGCAATGTGGGTGAAATCCCAAGACCCCGGTGTTCTAATGCCAGATGCAATAAGACTTTATTCTATGCACTTAACTTCGGTGGACTGACTGACTTCTGCACACTTGAATCTTCTAGTGGTTTTCCAATGCATCCCAGCCATGTTTGTACTCAAGTATGGAAGAGGAGCATGCCATGTCCTCCATTTTTGTGGAGAGtgactttttttattcagtttgtttttttaaattgtacatatgtatttatttcctgattttaattgtttggttTTGCTCTGTTAggtgtgtgaatgtgttcaCGTCACTGCAGCCACTCTTGCATTgcactgcactttattttgaaatgcaatcatgttttaactgtaaatttgtatattttatacttattaaaatgttttaatatgaaataaaggCTCCATTT
>TU82055
TGCTGACCCTGCTGCGGTCGGGCCGGCTGGCCACCCTGGTGGTGCTGGACGAGGGGAGCCGCTGCCTGGCCGAGCTGAGAGCGGAGAGTCTGGGCAGGATGCTCCTCAGCGCCCTGAGCGCAGAGCTGGGCCCCGGAGAGACGCGCGTCTGCTTCCTGCGAGGTGGCTTCGAGGGCTTCTTCTCGCTGTGGCCGCAGCTCTGTGTGAAGTCCCCGGGCCTGTGTG

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0005654 nucleoplasm cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020767 False 870 mRNA 0.71 4 32555686 32559096
TU82054 True 1363 lncRNA 0.50 3 32554860 32556557
TU82055 False 225 lncRNA 0.70 2 32557565 32558864

Neighbor

gene id symbol gene type direction distance location
AMCG00020769 adra2b,LOC108440671 coding downstream 59419 32493369 ~ 32495441 (-)
AMCG00020765 NA coding downstream 92523 32455580 ~ 32462337 (-)
AMCG00020762 LOC107393839,LOC104958878 coding downstream 104984 32444254 ~ 32449876 (-)
AMCG00020760 pcna,LOC106580445,LOC106585071 coding downstream 111189 32439694 ~ 32443671 (-)
AMCG00020763 kcnip3a,LOC108440810 coding downstream 148335 32398435 ~ 32406525 (-)
AMCG00020768 NA coding upstream 5149 32564245 ~ 32580573 (-)
AMCG00020775 NA coding upstream 25797 32584893 ~ 32591227 (-)
AMCG00020777 NA coding upstream 35174 32594270 ~ 32598433 (-)
AMCG00020780 NA coding upstream 39881 32598977 ~ 32600643 (-)
AMCG00020776 NA coding upstream 52395 32611491 ~ 32613957 (-)
G65571 NA non-coding downstream 39243 32515403 ~ 32515617 (-)
G65468 NA non-coding downstream 339103 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 367149 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 493563 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 751068 31785515 ~ 31803792 (-)
G65753 NA non-coding upstream 715080 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1246605 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1272639 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1402081 33961177 ~ 33962191 (-)
G65815 NA non-coding upstream 1422694 33981790 ~ 33982026 (-)
G65549 NA other downstream 189718 32358238 ~ 32365142 (-)
AMCG00020746 NA other downstream 431927 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 1142037 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 1746014 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 1816884 30722783 ~ 30737976 (-)
AMCG00020774 snrpg other upstream 48766 32607862 ~ 32610708 (-)
G65641 NA other upstream 96038 32655134 ~ 32657019 (-)
G65679 NA other upstream 327268 32886364 ~ 32891493 (-)
G65756 NA other upstream 809529 33368625 ~ 33369105 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 1663219 34222315 ~ 34239697 (-)

Expression


Co-expression Network