AMCG00020774 (snrpg)


Basic Information

Item Value
gene id AMCG00020774
gene name snrpg
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32607862 ~ 32610708 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020774
TTGTGACGTAATTCTAAGCCAACTTCCTGCTCGGACAGCGTGTGTGTCCCGCCGTTTAGTCAACTAAGAAGTCAATCAAAAAACTAATATTACCAGTTTCATTTGACTATTTATTGATTGAAAACCACTCCGGACTGCAAAATGAGCAAAGCGCACCCTCCAGAGTTGAAGAAGTTCATGGACAAGAAGCTGTCGTTGAAGCTGAATGGTGGACGGCACGTCCAGGGCATCCTGCGCGGGTTCGACCCTTTCATGAACCTGGTGATGGATGACTGTCTGGAGCTCGCCCAGGGGGGGCAGCAGAACACCATCGGCATGGTGGTGATCAGAGGAAACAGTATAATCATGCTGGAAGCCCTGGAGAGAGTATGAgggggtgcgtgtgtccctgaaGTGCAGCCCCACAGCCCCACATGGAAGAGGAGTCCAAGCCACAGCCGCAATTCCAGCCCACTATGCAGCTGCCAATCACCTGCCCAGGGAAATCCCCAACCCGGGGTGCCAGCAATCTAACCACACTCACGTTTTGAACAGTTCCTACCCAGGCGGTCtctcctggtcctgcagagccccCCCAACCCCATTGAATCGTAATTCATCAGCACAGTGGGCTCGAGAAGAAAAgatgaaattaaacaaagtgtACCAGTCTGGGAACAACAATACTCCACGTGTTCATTGCCCCCCAGATCAGAGCGACTACATGGGAACTCTGCCCTCCCCTCGAATCCGATCGCAATGTGCCCCATCGTAGTAGAGCAGCAGAGTCATAGTTCATGATTGGCAGGGAGCTCAGAGTTTGAATTTGGCCAAGgcctgtgtgggtgtgtttcgATCGGCTGTTTGAGGTGCTGGGCTGTGCTAGGTGttcttttacatttgttttttgttttgttttgggtatTGAGGGTAGCATTATCTGTTAATAattcaagattatttttttgtatgtgaaatGTTTGCCACGT
>TU82051
CTAAGCCAACTTCCTGCTCGGACAGCGTGTGTGTCCCGCCGTTTAGTCAACTAAGAAGTCAATCAAAAAACTAATATTACCAGTTTCATTTGACTATTTATTGATTGAAAACCACTCCGGACTGCAAAATGAGCAAAGCGCACCCTCCAGAGTTGAAGAAGTTCATGGACAAGAAGCTGTCGTTGAAGCTGAATGGTGGACGGCACGTCCAGGGCATCCTGCGCGGGTTCGACCCTTTCATGAACCTGGTGATGGATGACTGTCTGGAGCTCGCCCAGGGGGGGCAGCAGAACACCATCGGCATGGTGGTGATCAGAGGAAACAGTATAATCATGCTGGAAGCCCTGGAGAGAGTATGAgggggtgcgtgtgtccctgaaGTGCAGCCCCACAGCCCCACATGGAAGAGGAGTCCAAGCCACAGCCGCAATTCCAGCCCACTATGCAGCTGCCAATCACCTGCCCAGGGAAATCCCCAACCCGGGGTGCCAGCAATCTAACCACACTCACGTTTTGAACAGTTCCTACCCAGGCGGTCtctcctggtcctgcagagccccCCCAACCCCATTGAATCGTAATTCATCAGCACAGTGGGCTCGAGAAGAAAAgatgaaattaaacaaagtgtACCAGTCTGGGAACAACAATACTCCACGTGTTCATTGCCCCCCAGATCAGAGCGACTACATGGGAACTCTGCCCTCCCCTCGAATCCGATCGCAATGTGCCCCATCGTAGTAGAGCAGCAGAGTCATAGTTCATGATTGGCAGGGAGCTCAGAGTTTGAATTTGGCCAAGgcctgtgtgggtgtgtttcgATCGGCTGTTTGAGGTGCTGGGCTGTGCTAGGTGttcttttacatttgttttttgttttgttttgggtatTGAGGGTAGCATTATCTGTTAATAattcaagattatttttttgtatgtgaaatGTTTGCCACGTGATCCCGAGTAAGTCAAGAAATAAAGATACTGAGACGCAGTATTGaatcaagattttttttcttcatatttattGTAGTGCAGGAGTGTTGCTGAACAGTGTGTCAGTAGTCGCTTCATTACTGGCTTTACATACTGCTGAACACCATCGATGTGCAGTCCTGTGAGCCGATCCGCTCGGGGATTGTTGCCCGGCCTGCAGGGTTGTGCTGCTGCAGAGCCACGCTCTCTGCTGTCCAGCGGCTGTGAATGCAGTGGGGTGCTGACCCAGGAGCAGTGTGGTCTCCGTGTCCCCCTCTACAGCTCTCCGCGGAGGCGAGCATGCAGGTCCTCCTGGTCCACCTGCTCTTTCTCTCCACTCCAGCGGTGTCGGGCCAGCAGCGCCACGTTGCGGGCCGCCACGGCGCTGAGCTCGGGCCCGGCAGCAGCCCAGTCCACCGCGGACACATAGTACAGCCTCTCATGCAGCACCACAGGGGGCAGGCGGTGGGGGGTGCCGCTGTATGCAGGGGACGCCAGCCACTGCCGCCGGGACACCACCTCTGCCGGGGGCAGGAACAACGTCCCCAGCTGGCTCTCGCTCAGAGGCGCACTGGATAACACCCTCCACACGCGAGGCTGGTGAGCAGGGGGCCGGCGGTAGCCTGCTGGGGGACGCACAGGGTCCTGGGTGGTCAGGCTGTACACAGTAGGGCTGCCCCCCAGCCCTCCCACTGCACCCCCCATGTCCGTGGTCAGGATCTCAGAGGCCTGCAGGTCGGGGCTGGCGTGCAGCTGGGCGGTGTTGAGGCAGCCCAGCACCAGGGTGGTGACGGTGGGGTGGTAGCGGCCAGGGAAGGGGGCGTTGACAGGGGGGGTGAGGCCCGGAAAGGTGATGTCAGAGGTGCCCTGTTGGAGGGGCGTGGCCACCACCACAATGTCATACAGCCCGTGGCCACCCCCATCCTCCCTGGTGTAGCTCACCTCGTACAGAGAAACGGAGTCCCCT

Function

symbol description
snrpg Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of SMN-Sm protein complex and nucleus. Predicted to be active in P granule. Is expressed in liver. Orthologous to several human genes including SNRPG (small nuclear ribonucleoprotein polypeptide G).

NR:

description
PREDICTED: small nuclear ribonucleoprotein G

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0004148 dihydrolipoyl dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020774 False 968 mRNA 0.50 4 32608849 32610708
TU82051 True 1942 TUCP 0.57 4 32607862 32610695

Neighbor

gene id symbol gene type direction distance location
AMCG00020780 NA coding downstream 7219 32598977 ~ 32600643 (-)
AMCG00020777 NA coding downstream 9429 32594270 ~ 32598433 (-)
AMCG00020775 NA coding downstream 16635 32584893 ~ 32591227 (-)
AMCG00020768 NA coding downstream 27289 32564245 ~ 32580573 (-)
AMCG00020769 adra2b,LOC108440671 coding downstream 112421 32493369 ~ 32495441 (-)
AMCG00020776 NA coding upstream 783 32611491 ~ 32613957 (-)
AMCG00020781 NA coding upstream 9066 32619774 ~ 32624594 (-)
AMCG00020779 NA coding upstream 19359 32630067 ~ 32640235 (-)
AMCG00020778 pgam2,LOC100691625,LOC101470049,LOC107706476,LOC107700776 coding upstream 32216 32642924 ~ 32644550 (-)
AMCG00020773 NA coding upstream 58203 32668911 ~ 32674378 (-)
G65571 NA non-coding downstream 92245 32515403 ~ 32515617 (-)
G65468 NA non-coding downstream 392105 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 420151 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 546565 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 804070 31785515 ~ 31803792 (-)
G65753 NA non-coding upstream 663468 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1194993 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1221027 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1350469 33961177 ~ 33962191 (-)
G65815 NA non-coding upstream 1371082 33981790 ~ 33982026 (-)
AMCG00020767 NA other downstream 48766 32554860 ~ 32559096 (-)
G65549 NA other downstream 242720 32358238 ~ 32365142 (-)
AMCG00020746 NA other downstream 484929 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 1195039 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 1799016 30800582 ~ 30808846 (-)
G65641 NA other upstream 44426 32655134 ~ 32657019 (-)
G65679 NA other upstream 275656 32886364 ~ 32891493 (-)
G65756 NA other upstream 757917 33368625 ~ 33369105 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 1611607 34222315 ~ 34239697 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 2197896 34808604 ~ 34814294 (-)

Expression


Co-expression Network