AMCG00020779


Basic Information

Item Value
gene id AMCG00020779
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32630067 ~ 32640235 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020779
ATGGGGGGGCTGAGCAGCCGCCTGGGGGTGTCCTTGGCCGGGGGGCAGCTGGTGGGGGGTGGCGGCGACAGCAGTGGTGGCAGGGAGTCCGGGTGCGAGTGCAGGAAGAGGAAGCGCAGCTCGCAGTGCTCACAGTGTGACAGTGAGGCTGAGGACGACGCCCTGCTGAACACACCGCGCAGGTCAGAGTGGAACCTGCACAAGGTGTACCTGTGCCAGtcAGGGTATTTCTCCAGTATGTTCAGCGGGTCCTGGAAGGAGTCCAGTATGACCGTCATCGAGCTGGAGATCCCGGATCAGACCATCGACACAGAAGCTCTACAGGTGGCGTTCGGGTCGCTGTACCGGGACGACGTTCTAATCAAGCCCAGCCGGGTCATCAGCATCCTGGCTGCCGCCTGCATGCTTCAGCTGGACGGGCTGATCCAGCAGTGCGGGGAGACGATGAAGGAGACCATCAGTGTGAAGACGGTGTGTGGGTACTACACCTCTGCTGGGACCTACGGGCTGGACTCCGTCAAGAAGAAGTCAGTGTTTCGCCCGACTCTTTTCCTGtggaTGTTCCTCCAGCTCTGTCCCTCCTGGAACAGCCCCATCAAGCAGCTCCTGGCGGACGCTGACACCTGGATCTCCAAGCAGAGACCGGAACTGGAGGAGGGCGTGCCGTTCCTGGACTCCCTGCAGGGCGCGCCGTTCGCACCCGCGTTCAGACATGTGCGCCTGCAGTACGTCATCAACGACCTGGCCTCTGCTCGCATTGTGGAGCGAGACAACATCCTGCCCCCGGAGTGGCTGTCTGCCGTGTACAAGCACCAGTGGTTTGCCATGCTGAGGACGGAGCACGAGAACGACACGGGCCCCCAGGAGGCCAACAAGGAGGAGTTTGAGGTGAACAGCATGCGCTGCGGGAGGAAGCTGCCCAAGGACGGGGACtacTGCTGGAGGTGGACGGGGTTTAACTTCGGGTTTGACCTGCTGGTGACTTTCACCAACCGCTTCATCGTCTTCAAGAGGAACACGCTGAGCCAGCCCTGCGGGGCCTCGGTCAGCTTGCACCCCCGCAGGCACATCGCATacagGCTGCGCTTGGCGTCCTTTGATGGCAGTGGGAAGCAGGTGTGCAGCCGCTCCACCGGGTACCAGCTTCTGGCTCTGGAGAAGGACCAGgAGTATGTGGTGATGAACCTGGACAGCCGGCTCCTGTCCTTCCCTCTGTACATCTGCTGCAACTTCCTGTATACCTCCCCCCCCAGCCGGCGGGCGGACAGCCCCGAGCCCGAGAGCAGCAGCCGCAGCGCGTCCTGACCGGCCCAGCCCTGCGGCCCTCCCCGAGCCCGAGACTCCTCCGGTTTGTTCGGGGGAGTGTTCTTCCCCTTTCCATCGTTGATAAGGTGCCTGCAGGCCCTGGTGACCTGGAGGCTGGACTTCCACACCCGTCCATCACCAGCAGAGAAGAGAGCCTCCTGGGACAACTTTTATAATCAAAAGCCTTTTTTATCTGATTTTTATAAGTGCCtttttcacattatttgtattattatttaagatcGGGGCCGCACCTGAGGCTTGGAGAGTGGAGTTGGGTGTGACTGAGCCGTCCTTGCGCTGGCAGCGCACTGCGGACCGGAGCGTTCGGGGGTCGGGGTAGCTAGAGACAAACACGCCGAGCGCGTCGCTGCTGATTGGCAAACTCCAGTTCTGGAGCCGCTAACAGCCGAACTCCTGCCCACACTGTcctgacaatttatttttaaaccctttttttatatatatatttatttctcttgtttttaCATCCCAGAACATGTGaacatgttttcaaagcagtgattaaaaacataattgaggTGCTCTTCGATCAGTCTGTGGGCAGCAGGTTTCACTACAGAGAGCCTGTCTGAGCCTTGGTCTCTCCCTCACCTTCCTTTTTCCATTGGACCGCTCTTCTgtgtgggggaagaaaaaaaatcatcaaataAAACAGCTTCTTTCATGTGGAGCAGCCAGCGTCAGCCCGAGGTCACTGGTGCtacactgaaatacacacacacacggtcaGTGTTCCTTACAGGACAGTAACATTCCTGAGGCTCATGGAACAACCAGGGAACAACNNNNNNNNNNcccacacacacacc

Function

GO: NA

KEGG:

id description
K10485 BTBD13, GMCL1, GCL; BTB/POZ domain-containing protein 13 (germ cell-less protein-like 1)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020779 True 2138 mRNA 0.57 12 32630067 32640235

Neighbor

gene id symbol gene type direction distance location
AMCG00020781 NA coding downstream 5473 32619774 ~ 32624594 (-)
AMCG00020776 NA coding downstream 16110 32611491 ~ 32613957 (-)
AMCG00020780 NA coding downstream 29424 32598977 ~ 32600643 (-)
AMCG00020777 NA coding downstream 31634 32594270 ~ 32598433 (-)
AMCG00020775 NA coding downstream 38840 32584893 ~ 32591227 (-)
AMCG00020778 pgam2,LOC100691625,LOC101470049,LOC107706476,LOC107700776 coding upstream 2689 32642924 ~ 32644550 (-)
AMCG00020773 NA coding upstream 28676 32668911 ~ 32674378 (-)
AMCG00020784 NA coding upstream 58964 32699199 ~ 32703449 (-)
AMCG00020785 NA coding upstream 106511 32746746 ~ 32748272 (-)
AMCG00020787 NA coding upstream 185420 32825655 ~ 32826629 (-)
G65571 NA non-coding downstream 114450 32515403 ~ 32515617 (-)
G65468 NA non-coding downstream 414310 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 442356 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 568770 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 826275 31785515 ~ 31803792 (-)
G65753 NA non-coding upstream 633941 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1165466 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1191500 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1320942 33961177 ~ 33962191 (-)
G65815 NA non-coding upstream 1341555 33981790 ~ 33982026 (-)
AMCG00020774 snrpg other downstream 19359 32607862 ~ 32610708 (-)
AMCG00020767 NA other downstream 70971 32554860 ~ 32559096 (-)
G65549 NA other downstream 264925 32358238 ~ 32365142 (-)
AMCG00020746 NA other downstream 507134 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 1217244 31365663 ~ 31412823 (-)
G65641 NA other upstream 14899 32655134 ~ 32657019 (-)
G65679 NA other upstream 246129 32886364 ~ 32891493 (-)
G65756 NA other upstream 728390 33368625 ~ 33369105 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 1582080 34222315 ~ 34239697 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 2168369 34808604 ~ 34814294 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002578 gmcl1 coding NC_007121.7 CM002894.2 7673446 ~ 7702029 (-)